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Bug 457500 - sci-mathematics/rkward-0.6.0 fails to install : cannot remove ... R.css
Summary: sci-mathematics/rkward-0.6.0 fails to install : cannot remove ... R.css
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Mathematics related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2013-02-14 08:26 UTC by Helmut Jarausch
Modified: 2013-02-28 22:25 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments

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Description Helmut Jarausch 2013-02-14 08:26:07 UTC
emering sci-mathematics/rkward-0.6.0 fails with
....
Installation appears to be complete (unfortunately it is hard to tell in CMake).
In case of errors, please make sure to consult the file 'INSTALL'.
--------------------
rm: cannot remove '/var/tmp/portage/sci-mathematics/rkward-0.6.0/image//usr/lib64/R/library/R.css': No such file or directory
 * ERROR: sci-mathematics/rkward-0.6.0 failed (install phase):
 *   (no error message)
 * 
 * Call stack:
 *     ebuild.sh, line  93:  Called src_install
 *   environment, line 3940:  Called die
 * The specific snippet of code:
 *       rm "${ED}"/usr/$(get_libdir)/R/library/R.css || die;

I think just removing that line from the ebuild should do - does it?
Helmut.
Comment 1 Sébastien Fabbro (RETIRED) gentoo-dev 2013-02-14 17:13:34 UTC
+*rkward-0.6.0-r1 (14 Feb 2013)
+
+  14 Feb 2013; Sébastien Fabbro <bicatali@gentoo.org> +rkward-0.6.0-r1.ebuild,
+  -rkward-0.6.0.ebuild:
+  Fixed for wrong R_HOME variable (bug #457502) and removing a file which wasn't
+  there (bug #457500). Simplified depedencies
+
Comment 2 Joaquim G Santos 2013-02-28 22:22:30 UTC
Hello everybody,

I'm still getting the same error at installation:

 * Messages for package sci-mathematics/rkward-0.6.0-r1:

 * This package will overwrite one or more files that may belong to other
 * packages (see list below).
 * 
 * Detected file collision(s):
 * 
 *      /usr/lib64/R/library/R.css
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * dev-lang/R-2.10.1:0::gentoo
 *      /usr/lib64/R/library/R.css
 * 
 * Package 'sci-mathematics/rkward-0.6.0-r1' NOT merged due to file
 * collisions. If necessary, refer to your elog messages for the whole
 * content of the above message.
 * 
 * The following package has failed to build or install:
 * 
 *  (sci-mathematics/rkward-0.6.0-r1::gentoo, ebuild scheduled for merge), Log file:
 *   '/var/tmp/portage/sci-mathematics/rkward-0.6.0-r1/temp/build.log

emerge --info

Portage 2.2.0_alpha163 (default/linux/amd64/13.0/desktop/kde, gcc-4.6.3, glibc-2.15-r3, 3.6.11-gentoo x86_64)
=================================================================
System uname: Linux-3.6.11-gentoo-x86_64-Intel-R-_Core-TM-2_Duo_CPU_P8600_@_2.40GHz-with-gentoo-2.1
KiB Mem:     4047352 total,   1868356 free
KiB Swap:    4200960 total,   3965480 free
Timestamp of tree: Thu, 28 Feb 2013 19:15:01 +0000
ld GNU ld (GNU Binutils) 2.22
app-shells/bash:          4.2_p37
dev-java/java-config:     2.1.12-r1
dev-lang/python:          2.7.3-r2, 3.2.3
dev-util/cmake:           2.8.9
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.1-r1
sys-apps/openrc:          0.11.8
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.9.6-r3, 1.11.6
sys-devel/binutils:       2.22-r1
sys-devel/gcc:            4.6.3
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.6 (virtual/os-headers)
sys-libs/glibc:           2.15-r3
Repositories: gentoo
Installed sets: @kde-4.9, @system
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=core2 -msse4.1 -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=core2 -msse4.1 -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync metadata-transfer news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://cesium.di.uminho.pt/pub/gentoo/ ftp://cesium.di.uminho.pt/pub/gentoo/ http://darkstar.ist.utl.pt/gentoo/ ftp://darkstar.ist.utl.pt/gentoo/ ftp://ftp.rnl.ist.utl.pt/pub/gentoo/  http://ftp.dei.uc.pt/pub/linux/gentoo/ ftp://ftp.dei.uc.pt/pub/linux/gentoo/"
LANG="pt_PT.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="X a52 aac accessibility acl acpi alsa amd64 apm asf avi bitmap-fonts bittorrent bluetooth branding bzip2 cairo cdda cdr cjk cli consolekit cracklib crypt css cups cxx dbus declarative djvu dri dts dv dvd dvdr ebook emboss encode exif faac faad fam fame fbcon fbcondecor ffmpeg firefox flac fortran ftp gdbm gif gimp glitz gpm handbook iconv imagemagick ipv6 jpeg jpeg2k kde kipi laptop lcms ldap libnotify live lm_sensors logrotate lzo mad matroska mjpeg mmx mmxext mng modplug modules mp2 mp3 mp4 mpeg mplayer mudflap multilib musepack musicbrainz ncurses networkmanager nls nptl nptlonly nsplugin nvidia odbc ogg openal openexr opengl openmp pam pango pbg pcre pdf phonon plasma png pnm policykit ppds profile python qt3support qt4 quicktime readline samba scanner schroedinger sdl semantic-desktop session slp smp sndfile speex spell sql sqlite sqlite3 sse sse2 sse3 sse4.1 ssl ssse3 startup-notification svg tcpd theora threads thumbnail tiff truetype truetype-fonts type1-fonts udev udisks unicode upower usb v4l v4l2 vcd vdpau vorbis wav webkit wmf wxwidgets x264 xanim xcb xcomposite xinerama xml xscreensaver xv xvid xvmc zlib zvbi" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="canon ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer nlpsolver pdfimport wiki-publisher" LINGUAS="pt_PT pt en" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby18 ruby19" SANE_BACKENDS="hp net" USERLAND="GNU" VIDEO_CARDS="vesa nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON



Thank you all for your efforts and help,

Jakomo