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Bug 450426 - sci-biology/shrimp-2.2.3 with sci-biology/emboss-6.3.1_p4 - file collision on /usr/bin/extractseq
Summary: sci-biology/shrimp-2.2.3 with sci-biology/emboss-6.3.1_p4 - file collision on...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Andrey Kislyuk (RETIRED)
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2013-01-05 17:55 UTC by Martin Mokrejš
Modified: 2013-02-17 09:38 UTC (History)
1 user (show)

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Runtime testing required: ---

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Description Martin Mokrejš 2013-01-05 17:55:09 UTC 
I looked into the file provided by shrimp and it is a hackish, python script doing the same like the one from emboss but accepting fever arguments and in different format. I propose keeping the one from emboss and the file from shrimp to rename as /usr/bin/extractseq.py.

BTW, /var/tmp/portage/sci-biology/shrimp-2.2.3/image/usr/bin/ contains README file. ;-)
Comment 1 Justin Lecher (RETIRED) gentoo-dev 2013-02-17 09:38:38 UTC 
+  17 Feb 2013; Justin Lecher <jlec@gentoo.org> shrimp-2.0.1.ebuild,
+  -shrimp-2.1.0.ebuild, shrimp-2.2.3.ebuild, metadata.xml:
+  Drop old; block collision with emboss, #450426; move to new python eclasses
+