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Bug 447558 - sci-visualization/paraview-3.14.1-r4 - CMake/generate_proxydocumentation.cmake:18 - No xmlpatterns executable was defined!!!
Summary: sci-visualization/paraview-3.14.1-r4 - CMake/generate_proxydocumentation.cmak...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2012-12-17 05:51 UTC by Dmitry Dzhus
Modified: 2012-12-20 11:46 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build log (build.log.gz,84.49 KB, application/gzip)
2012-12-17 05:52 UTC, Dmitry Dzhus
Details
build log (gzipped, 49M when unpacked) (build.log.gz,968.33 KB, application/gzip)
2012-12-19 17:10 UTC, Dmitry Dzhus
Details
equery f paraview (paraview-files,215.71 KB, text/plain)
2012-12-20 11:45 UTC, Dmitry Dzhus
Details

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Description Dmitry Dzhus 2012-12-17 05:51:09 UTC
When building ParaView, CMake fails on target 'vtkCommon'.
Comment 1 Dmitry Dzhus 2012-12-17 05:52:47 UTC
Created attachment 332546 [details]
build log
Comment 2 Dmitry Dzhus 2012-12-17 05:54:53 UTC
emerge --info:

Portage 2.1.11.37 (default/linux/amd64/10.0, gcc-4.6.3, glibc-2.16.0, 3.7.0-gentoo-snowflake x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-3.7.0-gentoo-snowflake-x86_64-Intel-R-_Core-TM-_i5-2320_CPU_@_3.00GHz-with-gentoo-2.2
Timestamp of tree: Sat, 15 Dec 2012 19:30:01 +0000
ld GNU ld (GNU Binutils) 2.22
distcc 3.1 x86_64-pc-linux-gnu [disabled]
app-shells/bash:          4.2_p39-r1
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.3-r2, 3.2.3
dev-util/cmake:           2.8.10.2
dev-util/pkgconfig:       0.27.1
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.11.2
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.9.6-r3, 1.10.3, 1.11.5
sys-devel/binutils:       2.22-r1
sys-devel/gcc:            4.6.3
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r3
sys-kernel/linux-headers: 3.1 (virtual/os-headers)
sys-libs/glibc:           2.16.0
Repositories: gentoo x-local lisp science emacs sunrise gentoo-haskell
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA Intel-SDP AdobeFlash-10.3 PUEL Oracle-BCLA-JavaSE skype-4.0.0.7-copyright"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -march=native -mavx -mfpmath=sse -fomit-frame-pointer -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=native -mavx -mfpmath=sse -fomit-frame-pointer -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync metadata-transfer news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="ftp://mirror2.corbina.ru/gentoo-distfiles/ ftp://mirror.yandex.ru/gentoo-distfiles/"
LANG="ru_RU.utf-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/portage/local /var/lib/layman/lisp /var/lib/layman/science /var/lib/layman/emacs /var/lib/layman/sunrise /var/lib/layman/haskell"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="3dnow 3dnowext X acl alsa amd64 avx berkdb bzip2 cairo cli cracklib crypt cuda cxx dbus dirac djvu doc dri examples exif ffmpeg fuse gdbm geos gif gmp gpm graphics graphite gtk3 hdf5 iconv icu ipv6 jpeg libxml2 llvm matroska mmx mmxext mng modules mudflap multilib ncurses nls nptl ogg opencl opengl openmp pam pcre pdf pkcs11 png pppd proj publishers readline sbcl science session smartcard sqlite sse sse2 sse3 sse4_1 ssl ssse3 tcpd tex4ht theora threads tiff toolkit-scroll-bars truetype udisks unicode vdpau vorbis x264 xetex xft zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en ru" PHP_TARGETS="php5-3" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_2" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="intel nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 3 Dmitry Dzhus 2012-12-17 05:55:30 UTC
emerge -pqv '=sci-visualization/paraview-3.14.1-r4'
[ebuild     U ] sci-visualization/paraview-3.14.1-r4 [3.12.0] USE="doc examples ffmpeg%* gui plugins* python theora%* -boost% -cg -coprocessing -gl2ps% -mpi -mysql -nvcontrol -webkit (-adaptive%) (-streaming%)"
Comment 4 François Bissey 2012-12-17 07:30:57 UTC
Yes I believe that was explored a bit in bug #434000 that the depencies are not all properly there. Real life means that I never really fixed it and I have paraview 3.98 to worry about (I could be very impolite about it).

I will try to apply the fixes that I had in mind so you can have a go.
Comment 5 François Bissey 2012-12-17 07:46:42 UTC
After close inspection of the build log this is a dup from bug #434000
Comment 6 François Bissey 2012-12-17 07:56:18 UTC
Synchronize the overlay and try again please.
Comment 7 Dmitry Dzhus 2012-12-19 17:10:07 UTC
Created attachment 332728 [details]
build log (gzipped, 49M when unpacked)

Thank you for your help. After pulling the updated dependencies, emerge managed to compile ParaView up to 55% before failing to build target `vtkRenderingCS`. Apparently something else is missing.
Comment 8 François Bissey 2012-12-19 20:28:42 UTC
Because you are building at -j5 it is not obvious where the error is. What you see at the end is only when all the various make threads have stopped. At 54% it complains about not finding vtknetcdf wchich is the netcdf copy shipped with paraview. I am surprised I missed one instance of that when I patched to use the system one. I actually cannot work out which option of yours is different from mine to trigger that. I will dig it.
Comment 9 François Bissey 2012-12-19 20:41:55 UTC
Found the stuff I forgot for netcdf. It is surprising it never happened to me something must be disabled in my configuration (with mpi which I think is the main difference).
Comment 10 François Bissey 2012-12-19 20:57:25 UTC
I pushed some changes. The last error is definitely a separate bug from your original report but needed fixing. Would you mind posting the result of equery f paraview once the install is finally successful.
Comment 11 Dmitry Dzhus 2012-12-20 11:45:39 UTC
Created attachment 332782 [details]
equery f paraview

(In reply to comment #10)
> I pushed some changes. The last error is definitely a separate bug from your
> original report but needed fixing. Would you mind posting the result of
> equery f paraview once the install is finally successful.

Thank you very much. Now I managed to emerge ParaView. `equery f` output result attached.