Portage 2.2.0_alpha142 (default/linux/amd64/10.0, gcc-4.7.2-asneeded, glibc-2.16.0, 3.4.7-hardened x86_64) ================================================================= System uname: Linux-3.4.7-hardened-x86_64-AMD_Opteron-TM-_Processor_6272-with-gentoo-2.2 Timestamp of tree: Sat, 03 Nov 2012 05:00:01 +0000 ld GNU ld (GNU Binutils) 2.23 ccache version 3.1.8 [disabled] app-shells/bash: 4.2_p39 dev-java/java-config: 2.1.12 dev-lang/python: 2.6.8, 2.7.3-r2, 3.2.3-r1 dev-util/ccache: 3.1.8 dev-util/cmake: 2.8.9-r1 dev-util/pkgconfig: 0.27.1 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.11.2 sys-apps/sandbox: 2.6 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.4_p6-r1, 1.9.6-r3, 1.10.3, 1.11.6, 1.12.4 sys-devel/binutils: 2.23 sys-devel/gcc: 4.6.3, 4.7.2 sys-devel/gcc-config: 1.7.3 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r4 sys-kernel/linux-headers: 3.6 (virtual/os-headers) sys-libs/glibc: 2.16.0 Repositories: gentoo tbamd64 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /etc/entropy /opt/openjms/config /usr/share/bufrtables /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.0/conf /usr/share/openvpn/easy-rsa /usr/share/qpsmtpd/plugins /usr/share/themes/oxygen-gtk/gtk-2.0 /var/bind /var/lib/hsqldb /var/lib/redmine/config /var/spool/torque /var/yp/Makefile" CONFIG_PROTECT_MASK="${EPREFIX}/etc/gconf /etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/games/angband/edit/ /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /var/lib/redmine/config/locales /var/lib/redmine/config/settings.yml" CXXFLAGS="-O2 -pipe -ggdb -march=native -ftracer -frecord-gcc-switches" DISTDIR="/var/cache/portage/distfiles" FCFLAGS="-O2 -pipe -ggdb -march=native -frecord-gcc-switches" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fail-clean fixlafiles merge-sync news parallel-fetch protect-owned sandbox sfperms strict test test-fail-continue unknown-features-warn unmerge-orphans userfetch userpriv usersandbox" FFLAGS="-O2 -pipe -ggdb -march=native -frecord-gcc-switches" GENTOO_MIRRORS="http://ftp.ucsb.edu/pub/mirrors/linux/gentoo/ http://gentoo.mirrors.hoobly.com/ http://gentoo.llarian.net/" LANG="en_US.utf8" LC_ALL="C" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j24" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/tmp" PORTDIR="/var/cache/tinderbox/tree" PORTDIR_OVERLAY="/root/overlay" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="3dnow 3dnowex acl amd64 berkdb bzip2 cli cracklib crypt cups cxx dri emacs ffmpeg fortran gdbm gnutls gpm iconv icu intl ipv6 mmx modules mudflap multilib ncurses nls nptl openmp pam pax_kernel pcre pdf plasma pppd qt3support readline semantic-desktop session snmp sse sse2 sse3 sse4 ssl ssse3 tcmalloc tcpd udev unicode vhosts zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" PHP_TARGETS="php5-3" PYTHON_TARGETS="python3_2 python2_7" RUBY_TARGETS="ruby18 ruby19 ree18" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LINGUAS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
your lapack is broken. I will setup a lxc to test the in tree stuff. we need some rewrite of the eselect code before we can bring the new stuff from the overlay to the tree. Hopefully we wil have done that till end of the year.
could you please tell me which lapack implementation you are using? I cannot reproduce it with reference implementation on x86
It's at the top of the log: Installed LAPACK for library directory lib64 [1] atlas * [2] reference Installed BLAS for library directory lib64 [1] atlas * [2] atlas-threads [3] reference Installed CBLAS for library directory lib64 [1] atlas [2] atlas-threads [3] gsl [4] reference *
Could you please switch to atlas for all implementations? Also for cblas and try again.
I told you before, this changes depending on what gets installed — if for whatever reason something block atlas and it get removed, it'll switch to whatever eselect decides...
okay, I tried it. On my system the selected implementation doesn't change when emergeing a new implementation. What ever happens in you tinderbox, the current way needs the have some manual interaction to keep things working. We are working on a solution, which really sadly needs some additional time. Please select the reference implementation for lapack, blas and cblas for your testing. This will reduce the false-positive due to some lapack/blas implementation problems.
Could you please retest this one?
