Bug 438498 – sci-chemistry/rasmol-2.7.5.2 please stabilize

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Justin Lecher (RETIRED) 2012-10-15 18:57:23 UTC]

Arches please stable. No bugs ever, only runtime.

[Comment 1 Justin Lecher (RETIRED) 2012-10-15 18:58:35 UTC]

Download http://pdb.rcsb.org/pdb/download/downloadFile.do?fileFormat=pdb&compression=NO&structureId=3ZUA and open.

[Comment 2 mike 2012-10-16 19:56:32 UTC]

x86 ok (repoman ok, compiles ok, usage test mostly ok)

Program freezes when activating: Display -> Molecular Surface
Message output when selecting:

CNTF_FLAGSDEFAULT 0
AtomTree created time 0,07 size 22970 depth 23

[Comment 3 Agostino Sarubbo 2012-10-17 11:52:14 UTC]

(In reply to comment #2)
> x86 ok (repoman ok, compiles ok, usage test mostly ok)

I'm curious how you say ok:

The following keyword changes are necessary to proceed:
#required by sci-chemistry/rasmol-2.7.5.2, required by =sci-chemistry/rasmol-2.7.5.2 (argument)
=sci-libs/cbflib-0.9.2.4 ~amd64
#required by sci-chemistry/rasmol-2.7.5.2, required by =sci-chemistry/rasmol-2.7.5.2 (argument)
=sci-libs/cqrlib-1.1.2-r1 ~amd64
#required by sci-chemistry/rasmol-2.7.5.2, required by =sci-chemistry/rasmol-2.7.5.2 (argument)
=sci-libs/neartree-3.1.1-r3 ~amd64

[Comment 4 mike 2012-10-17 17:25:11 UTC]

(In reply to comment #3)
> (In reply to comment #2)
> > x86 ok (repoman ok, compiles ok, usage test mostly ok)
> 
> I'm curious how you say ok:
> 
Yeah you are right, the listed points are ok provided that =sci-libs/cbflib-0.9.2.4, =sci-libs/cqrlib-1.1.2-r1 and =sci-libs/neartree-3.1.1-r3 get unmasked.

[Comment 5 Justin Lecher (RETIRED) 2012-10-18 17:32:37 UTC]

(In reply to comment #2)
> x86 ok (repoman ok, compiles ok, usage test mostly ok)
> 
> Program freezes when activating: Display -> Molecular Surface
> Message output when selecting:
> 
> CNTF_FLAGSDEFAULT 0
> AtomTree created time 0,07 size 22970 depth 23

Its not a bug, its a bad implementation.
Please visit http://chemistry.gsu.edu/Glactone/PDB/Amino_Acids/aa.html and pick one of those. They should work much quicker.

[Comment 6 mike 2012-10-18 18:06:18 UTC]

Using simple molecules like Glutamine the molecular surface works (though very slow).

[Comment 7 Agostino Sarubbo 2012-10-30 12:09:13 UTC]

(In reply to comment #3)
> (In reply to comment #2)
> > x86 ok (repoman ok, compiles ok, usage test mostly ok)
> 
> I'm curious how you say ok:
> 
> The following keyword changes are necessary to proceed:
> #required by sci-chemistry/rasmol-2.7.5.2, required by
> =sci-chemistry/rasmol-2.7.5.2 (argument)
> =sci-libs/cbflib-0.9.2.4 ~amd64
> #required by sci-chemistry/rasmol-2.7.5.2, required by
> =sci-chemistry/rasmol-2.7.5.2 (argument)
> =sci-libs/cqrlib-1.1.2-r1 ~amd64
> #required by sci-chemistry/rasmol-2.7.5.2, required by
> =sci-chemistry/rasmol-2.7.5.2 (argument)
> =sci-libs/neartree-3.1.1-r3 ~amd64

Can someone open the bug for those depend?

[Comment 8 Agostino Sarubbo 2012-10-31 16:46:56 UTC]

amd64 stable

[Comment 9 Anthony Basile 2012-11-11 15:24:08 UTC]

stable ppc

[Comment 10 Andreas Schürch 2012-12-20 14:12:59 UTC]

x86 done, last arch, closing!