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Bug 433806 - sci-libs/clapack-3.2.1-r6 src_test() fails
Summary: sci-libs/clapack-3.2.1-r6 src_test() fails
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Unspecified (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2012-09-03 15:41 UTC by Chris Reffett (RETIRED)
Modified: 2017-01-29 09:27 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
LastTest.log (LastTest.log,7.49 KB, text/plain)
2012-09-03 15:44 UTC, Chris Reffett (RETIRED)
Details
build.log.bz2 (build.log.bz2,33.53 KB, application/octet-stream)
2012-09-03 15:47 UTC, Chris Reffett (RETIRED)
Details
build.log.xz (clapack-3.2.1-r6_build.log.xz,37.54 KB, application/octet-stream)
2012-11-07 12:22 UTC, Nikoli
Details

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Description Chris Reffett (RETIRED) gentoo-dev Security 2012-09-03 15:41:00 UTC
See summary. Two tests segfault for me, and test 6 is either hanging or taking an extremely long time to run, and my genlop history indicates that this same clapack version took much less time to merge (with tests) last time I built it, so I don't think it's supposed to take that long. Since this did merge correctly before (last merge Aug 10), and none of the DEPENDs have changed, I suspect this may be an issue brought on by cmake (currently running 2.8.9).

emerge --info:
Portage 2.2.0_alpha123 (default/linux/amd64/10.0/desktop/kde, gcc-4.7.1, glibc-2.15-r2, 3.4.3-gentoo x86_64)
=================================================================
System uname: Linux-3.4.3-gentoo-x86_64-Intel-R-_Core-TM-_i5_CPU_M_560_@_2.67GHz-with-gentoo-2.2
Timestamp of tree: Sat, 01 Sep 2012 18:00:01 +0000
ccache version 3.1.8 [enabled]
app-shells/bash:          4.2_p37
dev-java/java-config:     2.1.12
dev-lang/python:          2.7.3-r2, 3.2.3-r1
dev-util/ccache:          3.1.8
dev-util/cmake:           2.8.9::kde
dev-util/pkgconfig:       0.27.1
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.10.5
sys-apps/sandbox:         2.6
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.9.6-r3, 1.11.6, 1.12.3
sys-devel/binutils:       2.22.90
sys-devel/gcc:            4.7.1
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r3
sys-kernel/linux-headers: 3.5 (virtual/os-headers)
sys-libs/glibc:           2.15-r2
Repositories: gentoo kde sunrise zeugma-local
Installed sets: @kde-4.9
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA AdobeFlash-10.3 dlj-1.1 google-chrome googleearth google-talkplugin Oracle-BCLA-JavaSE PUEL RTCW Q3AEULA skype-4.0.0.7-copyright"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -march=native -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/openvpn/easy-rsa /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=native -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs ccache config-protect-if-modified distlocks ebuild-locks fixlafiles news parallel-fetch parse-eapi-ebuild-head preserve-libs protect-owned sandbox sfperms sign strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en en_US"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/kde /var/lib/layman/sunrise /usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X a52 aac accessibility acl acpi alsa amd64 bash-completion berkdb bluetooth branding bzip2 cairo caps cdda cddb cdr cli consolekit cracklib crypt cups cxx dbus declarative dri dts dvd dvdr emboss encode exif fam ffmpeg firefox flac fortran gdbm geoip gif git gpm gstreamer gtk iconv id3tag ipod ipv6 java jpeg kde kipi lame latex lcms ldap libnotify mad mmx mng modules mp3 mp4 mpeg mudflap multilib ncurses networkmanager nls nptl nsplugin offensive ogg openal opengl openmp pam pango pcre pdf phonon plasma png policykit ppds pppd python qt3support qt4 readline sdl semantic-desktop session spell sql sse sse2 ssl ssse3 startup-notification svg tcpd threads tiff truetype udev udisks unicode upower usb v4l v4l2 vim-syntax vorbis wifi wxwidgets x264 xcb xcomposite xinerama xml xscreensaver xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en en_US" PHP_TARGETS="php5-4" PYTHON_TARGETS="python3_2 python2_7" QEMU_SOFTMMU_TARGETS="*" QEMU_USER_TARGETS="*" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="ati radeon fglrx intel v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Chris Reffett (RETIRED) gentoo-dev Security 2012-09-03 15:44:36 UTC
Created attachment 322828 [details]
LastTest.log

LastTest.log file from ctest
Comment 2 Chris Reffett (RETIRED) gentoo-dev Security 2012-09-03 15:47:26 UTC
Created attachment 322830 [details]
build.log.bz2

build.log, bzipped because of size.
Comment 3 Nikoli 2012-11-07 12:22:53 UTC
Created attachment 328668 [details]
build.log.xz

A lot tests fail.

Portage 2.1.11.31 (hardened/linux/amd64, gcc-4.5.4, glibc-2.15-r3, 3.5.6-hardened x86_64)
=================================================================
                        System Settings
=================================================================
Timestamp of tree: Wed, 07 Nov 2012 07:45:01 +0000
ld GNU ld (GNU Binutils) 2.22
app-shells/bash:          4.2_p37
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.3-r2
dev-util/cmake:           2.8.9-r1
dev-util/pkgconfig:       0.27.1
sys-apps/baselayout:      2.1-r1
sys-apps/openrc:          0.9.8.4
sys-apps/sandbox:         2.5
sys-devel/binutils:       2.22-r1
sys-devel/gcc:            4.5.4
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r3
sys-kernel/linux-headers: 3.4-r2 (virtual/os-headers)
sys-libs/glibc:           2.15-r3
Repositories: gentoo nikoli
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=core2 -mtune=generic -mavx -maes -mpclmul -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/openvpn/easy-rsa /usr/share/themes/oxygen-gtk/gtk-2.0 /usr/share/themes/oxygen-gtk/gtk-3.0"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=core2 -mtune=generic -mavx -maes -mpclmul -O2 -pipe"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch protect-owned sandbox sfperms strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="ru en"
MAKEOPTS="-j9"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTDIR_OVERLAY="/var/lib/layman/nikoli"
USE="X a52 aac acl acpi aes-ni akonadi alsa amd64 amr atm audiofile avx bash-completion bzip2 cairo caps cdda cddb cdio cdparanoia cdr celt cli consolekit cracklib crypt css cups cxx dbus djvu dri dts dv dvd dvdr encode exif fat ffmpeg flac fluidsynth fontconfig fortran gd geoip gif gimp gmp gnutls gphoto2 gpm graphviz gsm gstreamer gtk handbook hardened iconv icu id3tag idn ilbc imagemagick imap imlib ios ipod ipv6 jbig jpeg jpeg2k justify kde kipi kontact lame laptop lcms libass libnotify libproxy libsamplerate lm_sensors lzma lzo mac mad matroska mikmod mmx mmxext mng modplug modules mp3 mp4 mpeg mtp mudflap multilib musepack musicbrainz ncurses networkmanager nls nptl nptlonly ntfs ogg openal openexr opengl openmp opus pam pango pax_kernel pcre pdf pg-intdatetime phonon plasma pm-utils png policykit postscript pppd qt3support qt4 quicktime rar raw readline reiserfs replaygain rtmp sasl scanner schroedinger semantic-desktop session sid smp sndfile socks5 speex spell sqlite sse sse2 sse3 sse4_1 ssl ssse3 startup-notification svg symlink sysfs taglib theora threads thumbnail tiff truetype tta udev udisks unicode upnp upower usb v4l v4l2 vaapi vcd vdpau vorbis vpx wavpack webkit webp wifi wma wmf wps x264 xattr xcb xcomposite xface xinerama xml xmp xpm xscreensaver xv xvid xz zip zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="*" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="pdfimport presenter-console presenter-minimizer report-builder nlpsolver" LINGUAS="ru en" NGINX_MODULES_HTTP="access auth_basic autoindex fastcgi gzip rewrite" PHP_TARGETS="php5-3" PYTHON_TARGETS="python3_2 python2_7" QEMU_SOFTMMU_TARGETS="i386 x86_64" QEMU_USER_TARGETS="i386 x86_64" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="radeon r600 modesetting vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"

=================================================================
                        Package Settings
=================================================================

sci-libs/clapack-3.2.1-r6 was built with the following:
USE="(multilib) (-test)"
Comment 4 Johannes Huber (RETIRED) gentoo-dev 2017-01-29 09:27:05 UTC
Thanks. Tests restricted.

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0ff25e14760c1f1cefe22f18bd0fdc5c827675d0