>>> Source unpacked in /var/tmp/portage/sci-biology/infernal-1.0.2-r1/work >>> Preparing source in /var/tmp/portage/sci-biology/infernal-1.0.2-r1/work/infernal-1.0.2 ... * Applying infernal-1.0.2-parallel-build.patch ... [ ok ] * Applying infernal-1.0.2-overflows.patch ... [ ok ] * Applying infernal-1.0.2-perl-5.16.patch ... * Failed Patch: infernal-1.0.2-perl-5.16.patch ! * ( /usr/portage/sci-biology/infernal/files/infernal-1.0.2-perl-5.16.patch )
Created attachment 321102 [details] infernal-1.0.2-perl-5.16.patch.out
workd here, please try again.
Nope, still broken. Tried that on other machine with same result: wloczykij ~ # cat '/home/p/portage/sci-biology/infernal-1.0.2-r1/temp/build.log' * Package: sci-biology/infernal-1.0.2-r1 * Repository: gentoo * Maintainer: weaver@gentoo.org sci-biology@gentoo.org * USE: elibc_glibc kernel_linux userland_GNU x86 * FEATURES: distcc preserve-libs sandbox >>> Unpacking source... >>> Unpacking infernal-1.0.2.tar.gz to /home/p/portage/sci-biology/infernal-1.0.2-r1/work >>> Source unpacked in /home/p/portage/sci-biology/infernal-1.0.2-r1/work >>> Preparing source in /home/p/portage/sci-biology/infernal-1.0.2-r1/work/infernal-1.0.2 ... * Applying infernal-1.0.2-parallel-build.patch ... [ ok ] * Applying infernal-1.0.2-overflows.patch ... [ ok ] * Applying infernal-1.0.2-perl-5.16.patch ... * Failed Patch: infernal-1.0.2-perl-5.16.patch ! * ( /home/p/drzewko/sci-biology/infernal/files/infernal-1.0.2-perl-5.16.patch ) * * Include in your bugreport the contents of: * * /home/p/portage/sci-biology/infernal-1.0.2-r1/temp/infernal-1.0.2-perl-5.16.patch.out
fails here too
Created attachment 379350 [details] patch output
+ 06 Jul 2014; Justin Lecher <jlec@gentoo.org> infernal-1.0.2-r1.ebuild, + +files/infernal-1.0.2-perl-5.16-2.patch, + -files/infernal-1.0.2-perl-5.16.patch: + Add patch as binary to prevent CVS magics, #431076 +
