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Bug 423347 - sys-libs/uclibc-0.9.33.2 atexit symbol errors with gzip
Summary: sys-libs/uclibc-0.9.33.2 atexit symbol errors with gzip
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Core system (show other bugs)
Hardware: x86 Linux
: Normal major
Assignee: Gentoo Linux bug wranglers
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2012-06-24 16:20 UTC by Jude Pereira
Modified: 2012-06-25 01:58 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


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Description Jude Pereira 2012-06-24 16:20:59 UTC
I'm trying to update my uclibc system, and for most packages I end up getting:

gzip: can't resolve symbol 'atexit' in lib 'gzip'.

This is very weird, as all the packages fails to build because of this.

Reproducible: Always

Steps to Reproduce:
1. Update uclibc to 0.9.33.2 and gzip-1.4
2. emerge -v gzip
Actual Results:  
 * gzip-1.4.tar.gz RMD160 SHA1 SHA256 size ;-) ...                                                                           [ ok ]
>>> Unpacking source...
>>> Unpacking gzip-1.4.tar.gz to /var/tmp/portage/app-arch/gzip-1.4/work
gzip: can't resolve symbol 'atexit' in lib 'gzip'.
tar: This does not look like a tar archive
tar: Exiting with failure status due to previous errors

Expected Results:  
Compilation should complete

Portage 2.1.10.49 (uclibc/x86, gcc-4.4.5, uclibc-0.9.33.2, 2.6.38-hardened-no-grsec-no-pax-default-r1 x86_64)
=================================================================
System uname: Linux-2.6.38-hardened-no-grsec-no-pax-default-r1-x86_64-AMD_Turion-tm-_64_X2_Mobile_Technology_TL-52-with-gentoo-2.0.3
Timestamp of tree: Mon, 18 Jun 2012 00:45:01 +0000
app-shells/bash:          4.1_p9
dev-lang/python:          2.7.1-r1
dev-util/pkgconfig:       0.25-r2
sys-apps/baselayout:      2.0.3
sys-apps/openrc:          0.8.3-r1
sys-apps/sandbox:         2.4
sys-devel/autoconf:       2.68
sys-devel/automake:       1.10.3, 1.11.1
sys-devel/binutils:       2.20.1-r1
sys-devel/gcc:            4.4.5
sys-devel/gcc-config:     1.6
sys-devel/libtool:        2.2.10
sys-devel/make:           3.82-r1
sys-kernel/linux-headers: 3.1 (virtual/os-headers)
sys-libs/uclibc:          0.9.33.2
Repositories: gentoo
ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="* -@EULA"
CBUILD="i386-gentoo-linux-uclibc"
CFLAGS="-march=i386 -Os -pipe"
CHOST="i386-gentoo-linux-uclibc"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /usr/share/openvpn/easy-rsa"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/udev/rules.d"
CXXFLAGS="-march=i386 -Os -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-Os"
FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles news nodoc noinfo noman parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-Os"
GENTOO_MIRRORS="http://ftp.jaist.ac.jp/pub/Linux/Gentoo/ ftp://ftp.jaist.ac.jp/pub/Linux/Gentoo/ http://mirror.bytemark.co.uk/gentoo/ http://distro.ibiblio.org/pub/linux/distributions/gentoo/"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="cli crypt cxx dri modules mudflap ncurses openmp pcre readline session ssl tcpd uclibc x86 xorg zlib" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="uclibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en" PHP_TARGETS="php5-3" PYTHON_TARGETS="python2_7" RUBY_TARGETS="ruby18 ruby19" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Dustin Polke 2012-06-24 18:09:38 UTC
There is a warning before uclibc starts compiling showing a list of packages that need to be compiled before uclibc or otherwise enable 'uclibc-compat' USE flag to not break things.

Was there, too. For me, recompiling gzip before the update helped. Good to see that you wanna roll new uclibc-stages again.
Comment 2 Jude Pereira 2012-06-25 01:37:24 UTC
I'll enable the uclibc-compat flag for uclibc, as I cannot recompile gzip itself.

And yes I'm updating the stages :-)
Comment 3 Jude Pereira 2012-06-25 01:58:12 UTC
thanks Dustin, uclibc-compat worked very well.