If I tried to start R after gcc upgrade to 4.6.3, it fails with: root@impala:/root(22)# R /usr/lib64/R/bin/exec/R: /usr/lib64/gcc/x86_64-pc-linux-gnu/4.5.3/libgfortran.so.3: version `GFORTRAN_1.4' not found (required by /usr/lib64/libf77blas.so.3) After reemerging sci-libs/atlas and R it works again: root@impala:/root(28)# genlop -t atlas | tail Tue Feb 21 01:50:52 2012 >>> sci-libs/atlas-3.9.67 merge time: 15 minutes and 40 seconds. Tue Feb 21 09:05:48 2012 >>> sci-libs/atlas-3.8.4 merge time: 12 minutes and 56 seconds. Sun Jun 3 22:07:01 2012 >>> sci-libs/atlas-3.8.4 merge time: 10 minutes and 23 seconds. root@impala:/root(29)# genlop -t atlas | tail Tue Feb 21 09:05:48 2012 >>> sci-libs/atlas-3.8.4 merge time: 12 minutes and 56 seconds. Sun Jun 3 22:07:01 2012 >>> sci-libs/atlas-3.8.4 merge time: 10 minutes and 23 seconds. Sat Jun 9 16:36:06 2012 >>> sci-libs/atlas-3.8.4 merge time: 10 minutes and 16 seconds. root@impala:/root(30)# R /usr/lib64/R/bin/exec/R: /usr/lib64/gcc/x86_64-pc-linux-gnu/4.5.3/libgfortran.so.3: version `GFORTRAN_1.4' not found (required by /usr/lib64/libf77blas.so.3) root@impala:/root(31)# genlop -t R | tail Wed Apr 4 10:07:22 2012 >>> dev-lang/R-2.15.0 merge time: 7 minutes and 46 seconds. Fri Apr 6 13:42:56 2012 >>> dev-lang/R-2.15.0 merge time: 7 minutes and 48 seconds. Wed Apr 25 05:19:58 2012 >>> dev-lang/R-2.15.0 merge time: 7 minutes and 50 seconds. root@impala:/root(32)# R R version 2.15.0 (2012-03-30) Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > Save workspace image? [y/n/c]: n root@impala:/root(33)# genlop -t R | tail Fri Apr 6 13:42:56 2012 >>> dev-lang/R-2.15.0 merge time: 7 minutes and 48 seconds. Wed Apr 25 05:19:58 2012 >>> dev-lang/R-2.15.0 merge time: 7 minutes and 50 seconds. Sat Jun 9 16:44:51 2012 >>> dev-lang/R-2.15.0 merge time: 6 minutes and 42 seconds.
(In reply to comment #0) > After reemerging sci-libs/atlas and R it works again: So where's the bug here? You've switched gfortran version, compiled atlas. This made atlas require newer libgfortran and then you've used R which was compiled with old libgfortran. Both of them were loaded at R's runtime and clashed... Please read gcc upgrading guide[1]. Whatever is written about C++ ABI there applies for fortran as well. [1] http://www.gentoo.org/doc/en/gcc-upgrading.xml
*** Bug 420315 has been marked as a duplicate of this bug. ***
