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Bug 416657 - app-portage/gentoolkit revdep-rebuild not detected libicuuc.so.48 needed by libxml2.so.2 (breaks dev-util/cmake-2.8.7-r5)
Summary: app-portage/gentoolkit revdep-rebuild not detected libicuuc.so.48 needed by l...
Status: RESOLVED INVALID
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: AMD64 Linux
: Normal normal (vote)
Assignee: Arfrever Frehtes Taifersar Arahesis
URL:
Whiteboard:
Keywords:
: 416825 416965 (view as bug list)
Depends on:
Blocks:
 
Reported: 2012-05-19 18:38 UTC by Bob Johnson
Modified: 2012-05-21 21:03 UTC (History)
4 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
Build Log (dev-util:cmake-2.8.7-r5:20120519-182404.log,316.87 KB, text/plain)
2012-05-19 18:40 UTC, Bob Johnson
Details

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Description Bob Johnson 2012-05-19 18:38:49 UTC
Today's sync brought stable dev-util/cmake-2.8.7-r5 to my amd64 system. However, the build fails with:
 * ERROR: dev-util/cmake-2.8.7-r5 failed (compile phase):
 *   emake failed
every time.

Reproducible: Always

Steps to Reproduce:
1.emerge --sync
2.emerge -uDv world
3.cmake fails



emerge --info =dev-util/cmake-2.8.7-r5

Portage 2.1.10.49 (default/linux/amd64/10.0, gcc-4.5.3, glibc-2.14.1-r3, 3.2.12-gentoo x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-3.2.12-gentoo-x86_64-Intel-R-_Core-TM-_i5-2500_CPU_@_3.30GHz-with-gentoo-2.0.3
Timestamp of tree: Sat, 19 May 2012 16:45:01 +0000
app-shells/bash:          4.2_p20
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.3-r1, 3.2.3
dev-util/cmake:           2.8.6-r4
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.0.3
sys-apps/openrc:          0.9.8.4
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:       2.21.1-r1
sys-devel/gcc:            4.5.3-r2
sys-devel/gcc-config:     1.5-r2
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r1
sys-kernel/linux-headers: 3.1 (virtual/os-headers)
sys-libs/glibc:           2.14.1-r3
Repositories: gentoo vmware x-portage
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA vmware"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0 /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch xattr"
FFLAGS="-march=native -O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en_US"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/vmware /usr/local/portage"
SYNC="rsync://rsync.namerica.gentoo.org/gentoo-portage"
USE="X acl alsa amd64 apache2 berkdb bzip2 cairo cli clucene consolekit cracklib crypt cups curl cxx dbus doc dri examples exif fontconfig fortran gcj gd gdbm gif handbook iconv icu ipv6 jack java jbig jpeg jpeg2k kde kipi kpathsea lcms lzma mbox mmx mng modules mudflap multilib ncurses nls nptl nsplugin odbc ogg openexr opengl openmp pam pango pcre pdf plasma png policykit postgres pppd qt3support readline semantic-desktop session source spell sse sse2 sse4_1 ssl ssse3 svg t1lib tcpd threads tiff truetype unicode xattr xinerama xml xorg xpm zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" APACHE2_MPMS="worker" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="canon" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev vmmouse wacom" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en_US" PHP_TARGETS="php5-3" PYTHON_TARGETS="python3_2 python2_7" RUBY_TARGETS="ruby18" SANE_BACKENDS="epson2" USERLAND="GNU" VIDEO_CARDS="fbdev intel radeon vesa vmware" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Bob Johnson 2012-05-19 18:40:05 UTC
Created attachment 312293 [details]
Build Log
Comment 2 Bob Johnson 2012-05-19 18:41:46 UTC
emerge -pqv =dev-util/cmake-2.8.7-r5:

[ebuild     U ] dev-util/cmake-2.8.7-r5 [2.8.6-r4] USE="ncurses qt4 -emacs -test -vim-syntax"
Comment 3 Chí-Thanh Christopher Nguyễn gentoo-dev 2012-05-19 18:43:39 UTC
/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/../../../../x86_64-pc-linux-gnu/bin/ld: warning: libicuuc.so.48, needed by /usr/lib64/libxml2.so.2, not found (try using -rpath or -rpath-link)

Try running revdep-rebuild.
Comment 4 Bob Johnson 2012-05-19 18:56:03 UTC
Right you are. I just tried rebuilding with makeopts -j5 turned off, and finally saw the actual error message. Strange thing, revdep-rebuild didn't pick up the problem. However, a manual rebuild of libxml2 followed by cmake fixed the issue.

Sorry for the false alarm. Closing this non-bug.
Comment 5 Bob Johnson 2012-05-19 18:56:31 UTC
Closed.
Comment 6 Chí-Thanh Christopher Nguyễn gentoo-dev 2012-05-21 01:00:30 UTC
*** Bug 416825 has been marked as a duplicate of this bug. ***
Comment 7 Arfrever Frehtes Taifersar Arahesis 2012-05-21 10:08:38 UTC
This bug seems to be invalid, since dev-libs/libxml2 libraries are linked against dev-libs/icu:

# scanelf -qF "%F: %n" $(qlist dev-libs/libxml2 | sort) | grep libicu
/usr/lib64/libxml2.so: libicui18n.so.49,libicuuc.so.49,libicudata.so.49,libpthread.so.0,libdl.so.2,libz.so.1,libm.so.6,libc.so.6
/usr/lib64/libxml2.so.2: libicui18n.so.49,libicuuc.so.49,libicudata.so.49,libpthread.so.0,libdl.so.2,libz.so.1,libm.so.6,libc.so.6
/usr/lib64/libxml2.so.2.7.8: libicui18n.so.49,libicuuc.so.49,libicudata.so.49,libpthread.so.0,libdl.so.2,libz.so.1,libm.so.6,libc.so.6
/usr/lib64/python2.6/site-packages/libxml2mod.so: libxml2.so.2,libicui18n.so.49,libicuuc.so.49,libicudata.so.49,libz.so.1,libpthread.so.0,libdl.so.2,libutil.so.1,libm.so.6,libpython2.7.so.1.0,libc.so.6
/usr/lib64/python2.7/site-packages/libxml2mod.so: libxml2.so.2,libicui18n.so.49,libicuuc.so.49,libicudata.so.49,libz.so.1,libpthread.so.0,libdl.so.2,libutil.so.1,libm.so.6,libpython2.7.so.1.0,libc.so.6
Comment 8 Bob Johnson 2012-05-21 16:03:25 UTC
I'm not sure why this bug got re-opened. I should have been more clear: revdep-rebuild didn't fix the issue because it had an issue with circular dependencies, at least on my system, and didn't get around to re-building libxml2 because it put something else (I can't remember what now) in front of libxml2. 'Something else' also depended on libxml2 and broke. I run into this occasionally with revdep-rebuild. I just didn't notice it at first when I posted this bug report. I've marked it 'resolved' before; feel free to to so again :-)
Comment 9 Mike Gilbert gentoo-dev 2012-05-21 21:03:32 UTC
*** Bug 416965 has been marked as a duplicate of this bug. ***