Bug 412805 – sci-visualization/fityk-0.9.7 - In function 'swig_module_info* SWIG_Python_GetModule()': ./fityk_python.cpp:2452:51: error: 'PyCObject_Import' was not declared in this scope

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Juergen Rose 2012-04-20 17:21:51 UTC]

'emerge fityk' fails with:
...
libtool: install: (cd /var/tmp/portage/sci-visualization/fityk-0.9.7/image//usr/lib64 && { ln -s -f liblua-fityk.so.3.0.0 liblua-fityk.so || { rm -f liblua-fityk.so && ln -s liblua-fityk.so.3.0.0 liblua-fityk.so; }; })
libtool: install: /usr/bin/install -c .libs/liblua-fityk.lai /var/tmp/portage/sci-visualization/fityk-0.9.7/image//usr/lib64/liblua-fityk.la
libtool: install: warning: remember to run `libtool --finish /usr/lib64'
./fityk_python.cpp: In function 'swig_module_info* SWIG_Python_GetModule()':
./fityk_python.cpp:2452:51: error: 'PyCObject_Import' was not declared in this scope
./fityk_python.cpp: In function 'void SWIG_Python_SetModule(swig_module_info*)':
./fityk_python.cpp:2521:92: error: 'PyCObject_FromVoidPtr' was not declared in this scope
./fityk_python.cpp: In function 'swig_type_info* SWIG_Python_TypeQuery(const char*)':
./fityk_python.cpp:2544:60: error: 'PyCObject_AsVoidPtr' was not declared in this scope
./fityk_python.cpp:2549:51: error: 'PyCObject_FromVoidPtr' was not declared in this scope
./fityk_python.cpp: In function 'std::vector<fityk::Point>* std_vector_Sl_fityk_Point_Sg____getitem____SWIG_0(std::vector<fityk::Point>*, PySliceObject*)':
./fityk_python.cpp:4219:60: error: cannot convert 'PySliceObject*' to 'PyObject*' for argument '1' to 'int PySlice_GetIndices(PyObject*, Py_ssize_t, Py_ssize_t*, Py_ssize_t*, Py_ssize_t*)'
./fityk_python.cpp: In function 'void std_vector_Sl_fityk_Point_Sg____setitem____SWIG_0(std::vector<fityk::Point>*, PySliceObject*, const std::vector<fityk::Point>&)':
./fityk_python.cpp:4228:60: error: cannot convert 'PySliceObject*' to 'PyObject*' for argument '1' to 'int PySlice_GetIndices(PyObject*, Py_ssize_t, Py_ssize_t*, Py_ssize_t*, Py_ssize_t*)'
./fityk_python.cpp: In function 'void std_vector_Sl_fityk_Point_Sg____delitem____SWIG_1(std::vector<fityk::Point>*, PySliceObject*)':
./fityk_python.cpp:4237:60: error: cannot convert 'PySliceObject*' to 'PyObject*' for argument '1' to 'int PySlice_GetIndices(PyObject*, Py_ssize_t, Py_ssize_t*, Py_ssize_t*, Py_ssize_t*)'
./fityk_python.cpp: In function 'std::vector<double>* std_vector_Sl_double_Sg____getitem____SWIG_0(std::vector<double>*, PySliceObject*)':
./fityk_python.cpp:4319:60: error: cannot convert 'PySliceObject*' to 'PyObject*' for argument '1' to 'int PySlice_GetIndices(PyObject*, Py_ssize_t, Py_ssize_t*, Py_ssize_t*, Py_ssize_t*)'
./fityk_python.cpp: In function 'void std_vector_Sl_double_Sg____setitem____SWIG_0(std::vector<double>*, PySliceObject*, const std::vector<double>&)':
./fityk_python.cpp:4328:60: error: cannot convert 'PySliceObject*' to 'PyObject*' for argument '1' to 'int PySlice_GetIndices(PyObject*, Py_ssize_t, Py_ssize_t*, Py_ssize_t*, Py_ssize_t*)'
./fityk_python.cpp: In function 'void std_vector_Sl_double_Sg____delitem____SWIG_1(std::vector<double>*, PySliceObject*)':
./fityk_python.cpp:4337:60: error: cannot convert 'PySliceObject*' to 'PyObject*' for argument '1' to 'int PySlice_GetIndices(PyObject*, Py_ssize_t, Py_ssize_t*, Py_ssize_t*, Py_ssize_t*)'
make[3]: *** [_fityk_la-fityk_python.lo] Error 1





Reproducible: Always




root@leopard:/root(29)# emerge --info =sci-visualization/fityk-0.9.7
Portage 2.1.10.56 (default/linux/amd64/10.0, gcc-4.5.3, glibc-2.14.1-r3, 3.3.0-gentoo-r1 x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-3.3.0-gentoo-r1-x86_64-Intel-R-_Core-TM-_i7-2600_CPU_@_3.40GHz-with-gentoo-2.1
Timestamp of tree: Fri, 20 Apr 2012 00:45:01 +0000
app-shells/bash:          4.2_p24
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.3, 3.2.2-r1
dev-util/cmake:           2.8.7-r5
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.1
sys-apps/openrc:          0.9.9.3
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.9.6-r3, 1.10.3, 1.11.5
sys-devel/binutils:       2.22-r1
sys-devel/gcc:            4.5.3-r2
sys-devel/gcc-config:     1.7
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r3
sys-kernel/linux-headers: 3.3 (virtual/os-headers)
sys-libs/glibc:           2.14.1-r3
Repositories: gentoo lisp science x-portage x-cpan x-g-octave
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1 skype-eula googleearth AdobeFlash-10.3 cadsoft Oracle-BCLA-JavaSE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch xattr"
FFLAGS=""
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo ftp://ftp.easynet.nl/mirror/gentoo/ "
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="de fr"
MAKEOPTS="-j9"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/lisp /var/lib/layman/science /usr/local/portage /var/lib/cpan /var/lib/g-octave"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="64bit R X Xaw3d a52 aac acl acpi admin afs alsa amd64 ao apache2 applet archive arpack asf aspell assistant atlas audacious audiofile automap automount bash-completion berkdb blas blast bluetooth bluray boo boost bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cg cgi chm cli consolekit cracklib crypt css cuda cups curl cxx daap db dbase dbi dbm dbus declarative designer devhelp device-mapper dga dia dirac djvu doc dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evo examples exif expat extensions extra extras faac faad ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpx fts3 fuse g3dvl gd gdal gdbm gdu gedit geoip geolocation geos gfortran gif gimp ginac git glade glib glpk gml gmp gmtsuppl gnome gnome-keyring gnome-print gnuplot gnutls gphoto2 gpm grammar graphics graphtft graphviz grass gs gsl gstreamer gtk gudev guile harness hddtemp hdf hdf5 hdri http httpd hvm hwdb iconv icq icu id3 ide imagemagick imap innodb inotify ipod ipv6 irda ithreads jabber jadetex java java6 jbig john jpeg jpeg2k kate kdrive kerberos kpathsea kqemu kvm ladspa lame lapack latex latex3 lcms ldap lensfun libffi libgda libnotify libsamplerate live lm_sensors lua lzo mad madwifi mail maildir mapnik math matroska matrox media-library mkl mmx mmxext mng modules mono motif mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap multilib musepack musicbrainz mysql mysqli nautilus ncurses netcdf netpbm network networking networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numpy nvidia obex objc ocaml ocr octave odbc ogdi ogg ole openexr opengl openmp overview pam pcre pda pdf perl plotutils plugins png podcast policykit portaudio posix postgres postscript ppds pppd preview-latex proj projectm projectx pstricks pulseaudio python python-bindings q16 q32 qemu qhull qt3support qt4 quicktime readline reiserfs reports rle romio rpc rrdcgi rrdtool samba sasl schroedinger science sdk sdl secure-delete server session shout sip slang slp smbclient smp sms sndfile snmp soup sox speex spell sql sqlite sse sse2 sse4 ssl subtitles subversion suexec svg svm swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs tgif theora threads thunderbird tidy tiff tk tools truetype udev unicode usb userlocales utempter vaapi video virtualbox vorbis wav webdav webdav-serf webkit wmf wxwidgets x264 xattr xcb xemacs xetex xext xft xine xml xmlreader xmlrpc xorg xpm xv xvid xvmc yaml zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" DRACUT_MODULES="caps lvm mdraid syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" PHP_TARGETS="php5-3" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nouveau vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON



root@leopard:/root(30)# emerge -pqv =sci-visualization/fityk-0.9.7
[ebuild  N    ] sci-visualization/fityk-0.9.7  USE="doc examples gnuplot lua python readline wxwidgets -static-libs"

[Comment 1 Juergen Rose 2012-04-20 17:23:01 UTC]

Created attachment 309645 [details]
/var/tmp/portage/sci-visualization/fityk-0.9.7/temp/build.log

[Comment 2 Sébastien Fabbro (RETIRED) 2012-04-24 17:10:31 UTC]

i can't reproduce. which version of swig and lua do you have on this box?

[Comment 3 Juergen Rose 2012-04-24 20:20:09 UTC]

root@leopard:/usr/src(19)# qlist -Iv swig lua
app-emacs/lua-mode-20100617-r1
dev-lang/lua-5.1.5
dev-lang/swig-2.0.4-r1
dev-tex/luatex-0.70.1

[Comment 4 Arfrever Frehtes Taifersar Arahesis 2012-04-25 01:02:56 UTC]

Compilation of fityk_python.cpp needlessly occurs in src_install() phase, during `emake DESTDIR="${D}" install`, so outside of environment set by python_execute_function(), so RESTRICT_PYTHON_ABIS="3.*" was ignored.

Ebuild contains:
sed '/^LTLIBRARIES/s:$(pyexec_LTLIBRARIES)::g' -i swig/Makefile.in
This works only for all-am target used in src_compile() phase.

swig/Makefile.in contains also:
install-exec-am: install-libLTLIBRARIES install-pyexecLTLIBRARIES

Ebuild probably should remove install-pyexecLTLIBRARIES from this line in swig/Makefile.in and call `emake ... install-pyexecLTLIBRARIES` in installation() function.

Bicatali: Set main active version of Python to 3.*.

[Comment 5 Sébastien Fabbro (RETIRED) 2012-04-25 03:18:07 UTC]

(In reply to comment #4)

> Bicatali: Set main active version of Python to 3.*.

which i had. 

anyway, i bumped to 0.9.8 and added the few things arfrever mentioned.
juergen, please try.

[Comment 6 Juergen Rose 2012-04-25 08:37:14 UTC]

Thanks Sébastien,

I could emerge fityk-0.9.8 and it seems to work.

[Comment 7 Sébastien Fabbro (RETIRED) 2012-04-25 15:39:08 UTC]

closing then. thanks juergen and arfrever.

[Comment 8 Arfrever Frehtes Taifersar Arahesis 2012-04-25 22:49:22 UTC]

I suggest to update also sci-visualization/fityk-1.1.1 ebuild.