Hello. =sys-apps/portage 2.2.0_alpha89 not detected 2 updatable packages when emerge -vuND -with-bdeps=y @world ran. Later emerge -pv --depclean complained about: Dependencies could not be completely resolved due to * the following required packages not being installed: * * ~dev-java/ant-core-1.8.1 pulled in by: * dev-java/ant-apache-xalan2-1.8.1 * * ~dev-java/ant-core-1.8.1 pulled in by: * dev-java/ant-trax-1.8.1 [ebuild U ] dev-java/ant-apache-xalan2-1.8.2 [1.8.1] 0 kB [ebuild U ] dev-java/ant-trax-1.8.2 [1.8.1] 0 kB Last time I saw this for bison or yacc. emerge -vuND -with-bdeps=y @world not found update but emerge -pve @world found it. Thank you. Reproducible: Always emerge --info Portage 2.2.0_alpha89 (default/linux/amd64/10.0/desktop/kde, gcc-4.6.2, glibc-2.14.1-r2, 3.2.6-gentoo x86_64) ================================================================= System uname: Linux-3.2.6-gentoo-x86_64-Intel-R-_Core-TM-2_Quad_CPU_Q9550_@_2.83GHz-with-gentoo-2.1 Timestamp of tree: Fri, 02 Mar 2012 16:30:01 +0000 app-shells/bash: 4.2_p20 dev-java/java-config: 2.1.11-r3 dev-lang/python: 2.7.2-r3, 3.2.2 dev-util/cmake: 2.8.7-r3 dev-util/pkgconfig: 0.26 sys-apps/baselayout: 2.1 sys-apps/openrc: 0.9.9.2 sys-apps/sandbox: 2.5 sys-devel/autoconf: 2.13, 2.68 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.3 sys-devel/binutils: 2.22-r1 sys-devel/gcc: 4.6.2 sys-devel/gcc-config: 1.5.1 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r3 sys-kernel/linux-headers: 3.2-r1 (virtual/os-headers) sys-libs/glibc: 2.14.1-r2 Repositories: gentoo Installed sets: ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -ggdb -march=core2" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0 /var/bind /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe -ggdb -march=core2" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="--quiet-build=n" FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles news nostrip parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch xattr" FFLAGS="-O2 -pipe -ggdb -march=core2" GENTOO_MIRRORS="ftp://gentoo.mirror.web4u.cz/" LANG="cs_CZ.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="cs en" MAKEOPTS="-j4" PKGDIR="/usr/portage/packages" PORTAGE_COMPRESS="echo" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo caps cdda cdr cli consolekit cracklib crypt cups cxx dbus declarative dri dts dvd dvdr emboss encode exif fam firefox flac fortran gdbm gdu gif gmp gpm gtk iconv idn ithreads java jpeg jpeg2k kde kipi lcms ldap libnotify lzma mad mmx mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl nptlonly objc objc++ objc-gc odbc ogg openexr opengl openmp pam pango pcre pdf phonon plasma png policykit ppds pppd qt3support qt4 quad readline samba sasl sdl semantic-desktop session slang speex spell sqlite sse sse2 ssl ssse3 startup-notification svg sysfs tcl tcpd threads tiff tk truetype udev unicode usb v4l vorbis wavpack x264 xattr xcb xcomposite xinerama xml xorg xscreensaver xv xvid xvmc zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="braindump flow karbon kexi krita plan stage tables words" CAMERAS="ptp2 canon hp215 sony_dscf1 sony_dscf55" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" GRUB_PLATFORMS="pc" INPUT_DEVICES="evdev keyboard mouse joystick" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="cs en" LIRC_DEVICES="inputlirc pctv hauppauge hauppauge_dvb devinput" PHP_TARGETS="php5-4" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nouveau" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
If you can reproduce it, then please post a debug log for the update command: emerge -vuND -with-bdeps=y @world --pretend --debug &> debug.log
Hello. The difference now is: emerge -pvuND --complete-graph @world These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild U ] net-dns/bind-9.9.0 [9.8.1_p1] USE="caps dlz geoip idn ldap ssl threads xml -berkdb -doc -gost -gssapi -ipv6 -mysql -odbc -pkcs11 -postgres -rpz -sdb-ldap (-selinux) -static-libs% -urandom" 0 kB [ebuild R #] sys-devel/gcc-4.6.2 USE="cxx fortran gcj go graphite gtk mudflap (multilib) nls nptl objc objc++ objc-gc openmp (-altivec) -bootstrap -build -doc (-fixed-point) (-hardened) (-libssp) -multislot -nocxx -nopie -nossp -test -vanilla (-libffi%)" 0 kB [ebuild U ] sci-chemistry/coot-0.7_pre4040 [0.6.2-r1] USE="openmp -static-libs -test" 0 kB [ebuild R ] app-office/libreoffice-3.5.0.3 USE="binfilter branding cups%* dbus graphite gstreamer gtk java kde mysql nsplugin odk opengl pdfimport postgres svg vba webdav xmlsec (-aqua) -debug -eds -gnome -gtk3 -jemalloc -test" 0 kB emerge -pve @world Total: 2417 packages (7 upgrades, 1 new, 2409 reinstalls, 1 interactive), Size of downloads: 2,126 kB Fetch Restriction: 2 packages Not "detected" packages: [ebuild U ] dev-perl/Sub-Uplevel-0.240.0 [0.220.0] 23 kB [ebuild U ] sys-apps/help2man-1.40.6 [1.40.5] USE="nls" 180 kB [ebuild U ] media-fonts/font-util-1.3.0 [1.2.0] 139 kB [ebuild U ] dev-python/d2to1-0.2.7 [0.2.5] 19 kB [ebuild U ] dev-python/stsci-distutils-0.3 [0.2.2] 42 kB [ebuild N ] sys-apps/paxctl-0.6 8 kB Going to submit output of: emerge -vuND --with-bdeps=y --pretend --debug @world > ./debug.log 2>&1 Thank you very much.
Created attachment 304435 [details] Output of --debug --pretend gzipped
(In reply to comment #2) > Not "detected" packages: > > [ebuild U ] dev-perl/Sub-Uplevel-0.240.0 [0.220.0] 23 kB > [ebuild U ] sys-apps/help2man-1.40.6 [1.40.5] USE="nls" 180 kB > [ebuild U ] media-fonts/font-util-1.3.0 [1.2.0] 139 kB > [ebuild U ] dev-python/d2to1-0.2.7 [0.2.5] 19 kB > [ebuild U ] dev-python/stsci-distutils-0.3 [0.2.2] 42 kB > [ebuild N ] sys-apps/paxctl-0.6 8 kB The log attached in comment #3 includes all of these updates, so I don't see what the problem is.
(In reply to comment #0) > [ebuild U ] dev-java/ant-apache-xalan2-1.8.2 [1.8.1] 0 kB > [ebuild U ] dev-java/ant-trax-1.8.2 [1.8.1] 0 kB The log attached in comment #3 also shows that these updates have already been performed, so there's nothing to see regarding them either.
I see the problem in fact that -uND --complete-graph is not enough to get all really available updates. If I wan to see if there is really all updated I have to run -pve. Thank you.
You don't need -e. All that you need is this (as proven by the fact that all the updates showed in your debug log): emerge -uND --with-bdeps=y @world This is covered in the "Why is it that emerge does not update all packages?" section of the FAQ located at http://www.gentoo.org/proj/en/portage/doc/faq.xml.
Hello. Thank you. I am sorry. I was "sure" that --complete-graph is "stronger" than --with-bdeps=y.
