Created attachment 303155 [details] Build log for dev-lang/R-2.12.1 dev-lang/R-2.12.1 fails to install because of compile phase error on Gentoo Prefix/Mac OS X. Reproducible: Always Steps to Reproduce: 1. # emerge dev-lang/R-2.12.1 Actual Results: it fails Expected Results: unknown (it should work, doesn't it?) Portage 2.2.01.20239-prefix (prefix/darwin/macos/10.7/x64, gcc-4.2.1, unavailable, 11.3.0 x86_64) ================================================================= System Settings ================================================================= System uname: Darwin-11.3.0-x86_64-i386-64bit Timestamp of tree: Fri, 24 Feb 2012 20:11:59 +0000 app-shells/bash: 4.2_p20::gentoo_prefix dev-java/java-config: 2.1.11-r3::gentoo_prefix dev-lang/python: 2.7.2-r3::gentoo_prefix dev-util/pkgconfig: 0.26::gentoo_prefix sys-devel/autoconf: 2.68::gentoo_prefix sys-devel/automake: 1.11.1::gentoo_prefix sys-devel/gcc-config: 1.5-r2::gentoo_prefix sys-devel/libtool: 2.4-r4::gentoo_prefix sys-devel/make: 3.82::gentoo_prefix Repositories: gentoo_prefix Installed sets: ACCEPT_KEYWORDS="~x64-macos" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-apple-darwin11" CFLAGS="-O2 -pipe -march=nocona" CHOST="x86_64-apple-darwin11" CONFIG_PROTECT="/etc" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/portage /etc/revdep-rebuild /etc/terminfo" CXXFLAGS="-O2 -pipe -march=nocona" DISTDIR="/Users/mys_721tx/Gentoo/usr/portage/distfiles" FEATURES="assume-digests binpkg-logs collision-protect distlocks ebuild-locks fixlafiles force-prefix news nostrip parallel-fetch preserve-libs protect-owned sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FFLAGS="" GENTOO_MIRRORS="http://ftp.ucsb.edu/pub/mirrors/linux/gentoo/ ftp://ftp.ucsb.edu/pub/mirrors/linux/gentoo/" LANG="en_US.UTF-8" LDFLAGS="-Wl,-dead_strip_dylibs" MAKEOPTS="-j3" PKGDIR="/Users/mys_721tx/Gentoo/usr/portage/packages" PORTAGE_CONFIGROOT="/Users/mys_721tx/Gentoo/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/Users/mys_721tx/Gentoo/var/tmp" PORTDIR="/Users/mys_721tx/Gentoo/usr/portage" PORTDIR_OVERLAY="" SYNC="rsync://rsync.prefix.freens.org/gentoo-portage-prefix" USE="aqua bash-completion bzip2 coreaudio cracklib cxx fortran iconv ipv6 jpeg lua mmx mmxext modules ncurses nls objc objc++ opengl png prefix python readline sse sse2 ssl svg unicode x64-macos zlib" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="Darwin" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse" KERNEL="Darwin" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
x86_64-apple-darwin11-gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -Wl,-dead_strip_dylibs -Wl,-soname=libRmath.so mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo expm1.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -o libRmath.dylib ld: unknown option: -soname=libRmath.so
Fixed now
Created attachment 305561 [details] A new build log after the bug is flagged as fixed. x86_64-apple-darwin11-gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -Wl,-dead_strip_dylibs -o libRmath.dylib -Wl,-soname,libRmath.so.0.0.0 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo expm1.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo ld: unknown option: -soname collect2: ld returned 1 exit status make[1]: *** [libRmath.dylib] Error 1
you should have version 2.14.2
