Bug 400901 – sci-libs/vtk-5.8.0 fails to build with dev-libs/boost-1.48.0-r1

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Severin Strobl 2012-01-26 12:19:21 UTC]

Trying to build sci-libs/vtk-5.8.0 using dev-libs/boost-1.48.0-r1 fails due to a recent change in the boost graph library.

The bug is reported upstream:
http://www.vtk.org/Bug/view.php?id=12772

Also a fix is available upstream:
https://github.com/Kitware/VTK/commit/5f051b98c0f9522d13c72c268626e0e05c911f5f

Reproducible: Always




Portage 2.1.10.41 (default/linux/amd64/10.0, gcc-4.5.3, glibc-2.13-r4, 3.2.1-gentoo x86_64)
=================================================================
System uname: Linux-3.2.1-gentoo-x86_64-Intel-R-_Core-TM-_i5_CPU_750_@_2.67GHz-with-gentoo-2.0.3
Timestamp of tree: Thu, 26 Jan 2012 09:30:01 +0000
app-shells/bash:          4.1_p9
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.2-r3, 3.1.3-r1
dev-util/cmake:           2.8.6-r4
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.0.3
sys-apps/openrc:          0.9.8.2
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.9.6-r3, 1.11.1
sys-devel/binutils:       2.21.1-r1
sys-devel/gcc:            4.4.5, 4.5.3-r1
sys-devel/gcc-config:     1.4.1-r1
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r1
sys-kernel/linux-headers: 3.1 (virtual/os-headers)
sys-libs/glibc:           2.13-r4
Repositories: gentoo science xarthisius x-portage
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA @FSF-APPROVED dlj-1.1 PUEL Oracle-BCLA-JavaSE AdobeFlash-10.1"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O3 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O3 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles metadata-transfer news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS=""
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en de"
MAKEOPTS="-j5 -l5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/science /var/lib/layman/xarthisius /usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="3dnow 3dnowext X a52 aac acl acpi aiglx alsa amd64 avi bash-completion berkdb boost branding bzip2 cairo cdda cdparanoia cdr cli consolekit cracklib crypt cups cxx dbus dri dvd dvdr dvdread encode eselect exif ffmpeg flac fortran ftp gdbm gimpprint gmp gnome gnome-keyring gnutls gpm gstreamer gtk gtk2 hal iconv icu jabber java jpeg kpathsea ldap lm_sensors mad mmx mmxext mng modules mp3 mpi mplayer mudflap multilib ncurses nls nptl nptlonly nsplugin ogg oggvorbis opengl openmp pam pcre png postscript pppd python qt3support readline recode rtc sasl sdl session spell sqlite sse sse2 ssl ssse3 subtitles subversion svg symlink sysfs tcpd threads tiff truetype unicode usb vim-syntax vorbis x264 xft xinerama xml xmms xorg xulrunner xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" DRACUT_MODULES="caps crypt crypt-gpg lvm mdraid syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" GRUB_PLATFORMS="pc" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en de" PHP_TARGETS="php5-3" QEMU_SOFTMMU_TARGETS="i386 x86_64" QEMU_USER_TARGETS="i386 x86_64" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="radeon nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 1 Justin Lecher (RETIRED) 2012-02-10 19:36:13 UTC]

+  10 Feb 2012; Justin Lecher <[e-mail]> vtk-5.8.0.ebuild,
+  +files/vtk-5.8.0-boost.patch:
+  Backport patch for boost-4.48, #400901
+

[Comment 2 Juergen Rose 2012-03-16 14:41:00 UTC]

Hi Justin,

where is the patch?

Regards

[Comment 3 Justin Lecher (RETIRED) 2012-03-16 14:43:37 UTC]

(In reply to comment #2)
> Hi Justin,
> 
> where is the patch?
> 
> Regards

files/vtk-5.8.0-boost.patch

[Comment 4 Juergen Rose 2012-03-16 18:07:10 UTC]

OK, I was still using my local overlay.