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Bug 398025 - dev-db/mysql-5.1.56 - rm: cannot remove `/usr/share/info/DevIL_manual.info.bz2': Permission denied
Summary: dev-db/mysql-5.1.56 - rm: cannot remove `/usr/share/info/DevIL_manual.info.bz...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Linux MySQL bugs team
URL:
Whiteboard:
Keywords:
: 398179 (view as bug list)
Depends on:
Blocks:
 
Reported: 2012-01-07 13:52 UTC by Julian Ospald
Modified: 2012-01-11 10:35 UTC (History)
6 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
buildlog (buildlog.mysql,145.75 KB, text/plain)
2012-01-07 13:55 UTC, Julian Ospald
Details
Build Log of mysql-5.1.56 (buid.zip,89.58 KB, application/octet-stream)
2012-01-08 06:09 UTC, Renzo
Details

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Description Julian Ospald 2012-01-07 13:52:00 UTC
there are several access violations and a QA Notice about unrecognized configure options

complete buildlog attached.

wild guess: some issue with mysql eclass?

Reproducible: Always

Steps to Reproduce:
1. emerge mysql
Actual Results:  
access violation

Expected Results:  
compiles and respects sandbox

Portage 2.1.10.41 (default/linux/amd64/10.0, gcc-4.5.3, glibc-2.13-r4, 3.1.6-gentoo-ck2 x86_64)
=================================================================
System uname: Linux-3.1.6-gentoo-ck2-x86_64-Intel-R-_Core-TM-2_CPU_6400_@_2.13GHz-with-gentoo-2.0.3
Timestamp of tree: Sat, 07 Jan 2012 08:15:01 +0000
ccache version 3.1.6 [disabled]
app-shells/bash:          4.1_p9
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.2-r3, 3.1.4-r3
dev-util/ccache:          3.1.6
dev-util/cmake:           2.8.6-r4
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.0.3
sys-apps/openrc:          0.9.4
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:       2.21.1-r1
sys-devel/gcc:            4.4.5, 4.5.3-r1
sys-devel/gcc-config:     1.4.1-r1
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r1
sys-kernel/linux-headers: 2.6.39 (virtual/os-headers)
sys-libs/glibc:           2.13-r4
Repositories: sunrise gentoo-zh maggu2810-overlay dev-zero dauleet d-overlay gentoo hasufell-overlay
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS=""
GENTOO_MIRRORS="ftp://de-mirror.org/gentoo/ ftp://mirror.netcologne.de/gentoo/ ftp://gentoo.imj.fr/pub/gentoo/"
LANG="de_DE.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="de en"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/sunrise /var/lib/layman/gentoo-zh /var/lib/layman/maggu2810-overlay /var/lib/layman/dev-zero /var/lib/layman/dauleet /var/lib/layman/d /usr/portage /usr/local/portage"
SYNC="rsync://rsync1.de.gentoo.org/gentoo-portage"
USE="X a52 aac acl acpi alsa amd64 apng bash-completion berkdb btrfs bzip2 cairo cdr cli consolekit cracklib crypt cscope css cxx dbus dri dv dvd dvdr exif fat ffmpeg flac fontconfig fortran gdbm gif gpm gstreamer hddtemp iconv icq ipv6 jabber java jpeg jpeg2k lame libnotify lm_sensors matroska mmx modules mp3 mp4 mpeg mudflap multilib musepack nautilus ncurses nls nptl nptlonly nsplugin ntfs ogg opengl openmp oscar pam pcre pdf png policykit pppd python raw readline sdl session sound sse sse2 ssl ssse3 svg sysfs tcpd tiff timidity truetype udev unicode usb v4l vcd vdpau vim-syntax vnc vorbis wavpack wmf x264 xorg xv xvid xvmc zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev keyboard mouse joystick" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de en" PHP_TARGETS="php5-3" QEMU_SOFTMMU_TARGETS="i386 ppc ppc64 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia virtualbox" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Julian Ospald 2012-01-07 13:55:09 UTC
Created attachment 298229 [details]
buildlog
Comment 2 Julian Ospald 2012-01-07 14:07:28 UTC
no such thing issues with dev-db/mysql-5.1.56-r1 btw.
Comment 3 Lutz Schildt 2012-01-07 14:10:51 UTC
I have the exact same problem here on a fresh install.

emerge --info:

Portage 2.1.10.41 (default/linux/amd64/10.0/server, gcc-4.5.3, glibc-2.13-r4, 3.1.6-gentoo x86_64)
=================================================================
System uname: Linux-3.1.6-gentoo-x86_64-Quad-Core_AMD_Opteron-tm-_Processor_1352-with-gentoo-2.0.3
Timestamp of tree: Sat, 07 Jan 2012 00:45:01 +0000
app-shells/bash: 4.1_p9
dev-lang/python: 2.7.2-r3, 3.1.4-r3
dev-util/cmake: 2.8.6-r4
dev-util/pkgconfig: 0.26
sys-apps/baselayout: 2.0.3
sys-apps/openrc: 0.9.4
sys-apps/sandbox: 2.5
sys-devel/autoconf: 2.68
sys-devel/automake: 1.11.1
sys-devel/binutils: 2.21.1-r1
sys-devel/gcc: 4.5.3-r1
sys-devel/gcc-config: 1.4.1-r1
sys-devel/libtool: 2.4-r1
sys-devel/make: 3.82-r1
sys-kernel/linux-headers: 2.6.39 (virtual/os-headers)
sys-libs/glibc: 2.13-r4
Repositories: gentoo
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=k8 -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=k8 -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS=""
GENTOO_MIRRORS="http://mirror.netcologne.de/gentoo/ http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/ http://mirror.leaseweb.com/gentoo/"
LDFLAGS="-Wl,-O1,--as-needed"
LINGUAS="de en"
MAKEOPTS="-s -j3 -l8"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync.de.gentoo.org/gentoo-portage"
USE="acl amd64 apache2 berkdb bzip2 cli cracklib crypt cxx dri gd gdbm iconv mmx modules mudflap multilib mysql mysqli ncurses nls nptl nptlonly openmp pam pcre perl pppd python readline session snmp sse sse2 ssl suhosin symlink sysfs tcpd truetype unicode xml xmlreader xmlrpc xmlwriter xorg xsl zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="auth_basic auth_digest authn_pam authn_anon authn_default authn_file authz_default authz_groupfile authz_host authz_user disk_cache env expires rewrite status log_config" APACHE2_MPMS="itk" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de en" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga neomagic nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 4 Julian Ospald 2012-01-07 14:38:14 UTC
mysql-5.1.56 compiles fine with eclasses from portage-20120105.tar.xz ...

emerge --sync and reemerge leads to access violation again
Comment 5 Brianna Royles 2012-01-07 19:46:38 UTC
same problem here on a clean install, I keyworded dev-db/mysql to carry on with my install.

emerge --info:


Portage 2.1.10.41 (default/linux/amd64/10.0/desktop/gnome, gcc-4.5.3, glibc-2.13-r4, 3.2.0-gentoo-r1 x86_64)
=================================================================
System uname: Linux-3.2.0-gentoo-r1-x86_64-Intel-R-_Core-TM-_i7-2600K_CPU_@_3.40GHz-with-gentoo-2.0.3
Timestamp of tree: Sat, 07 Jan 2012 18:30:01 +0000
app-shells/bash:          4.1_p9
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.2-r3, 3.1.4-r3
dev-util/cmake:           2.8.6-r4
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.0.3
sys-apps/openrc:          0.9.4
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.11.1
sys-devel/binutils:       2.21.1-r1
sys-devel/gcc:            4.5.3-r1
sys-devel/gcc-config:     1.4.1-r1
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r1
sys-kernel/linux-headers: 2.6.39 (virtual/os-headers)
sys-libs/glibc:           2.13-r4
Repositories: gentoo
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=native -mcx16 -msahf -maes -mpclmul -mpopcnt -mavx --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -mtune=generic"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe -march=native -mcx16 -msahf -maes -mpclmul -mpopcnt -mavx --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -mtune=generic"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS=""
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_GB.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en_GB en en_US"
MAKEOPTS="-j9"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X a52 aac aacplus aacs acl acpi addressbook airplay alac alsa amd64 antialiasing apache2 applet archive artist-screen artworkextra audacious audio audioscrobbler automount avcodec avformat background backgrounds berkdb bittorrent bluetooth bluray boost branding btrfs bugzilla bzip2 cairo cal calendar cdb cdda cddb cdparanoia cdr cdrdao cdrom cheese cjk clamav clamd cleartype cli colord consolekit cover cracklib cron crypt css csv cups curl cvs cxx daap dbus dc1394 dia dmraid dri dts dvd dvdarchive dvdnav dvdr ebook eds emboss encode evo exif extras faac faad fam fancy fastscroll fat ffmpeg firefox firefox-bookmarks firefox3 flac flash flickr fluidsynth fm fonts foomaticdb fortran fortune fuse g15 gd gdbm gdm gdu gedit gif git github glchess glib gmail gnome gnome-keyring gnome-online-accounts gnome-shell google google-gadgets gphoto2 gpm graphics graphicsmagick groupwise grub gstreamer gtalk gtk gtk3 gzip h224 hddtemp highlight hires-icons html hunspell ical icons iconsets iconv icq icu id3 id3tag ieee1394 image imagemagick imlib inotify introspection ios iostats iplayer ipod ipv6 irc java jpeg lame lastfm lastfmfingerprint lastfmradio lcms ldap libnotify libvisual lm_sensors logrotate lua lua-cairo lua-imlib lyrics lyrics-screen lzma mad maps mdadm mixer mmx mng modules mp3 mp3rtp mp3tunes mp4 mpeg mplayer msn mudflap multilib multimedia music musicbrainz mysql nautilus ncurses new-login nfsv3 nls nmap normalize nptl nptlonly nsplugin ntfs ntp ntpd nvcontrol nvidia offensive ogg ogg123 opengl openmp openssl packagekit pam pango panorama pcre pdf pdf-writer pdfimport perl player playlist plugins png podcast policykit ppds pppd pulseaudio python qt3support qt4 rar raw rdesktop readline reiserfs replaygain rss rtf ruby samba scrobbler sdl sensord sensors session skype socialweb sound sounds spell sqlite sse sse2 sse3 sse4 sse4_1 sse4a ssh ssl ssse3 startup-notification subversion suid svg sysfs syslog tcpd theme_avp theme_deepblue theme_deeppurple theme_poetter themedesigner themes theora threads thumbnail thumbnails tiff truetype tslib udev unicode upnp usb vdpau video vlc vmware-tools vmware_guest_freebsd vmware_guest_linux vmware_guest_netware vmware_guest_solaris vmware_guest_winPre2k vmware_guest_windows vorbis wallpapers wav weather weather-metar weather-xoap webcam webdav webkit wireshark wma wmf x264 xattr xcb xine xinerama xml xorg xplanet xscreensaver xulrunner xv xvid yahoo youtube zip zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en_GB en en_US" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 6 chronoscope 2012-01-07 19:48:20 UTC
Prior to the post of this bug I did emerge -1 dev-db/mysql @ hasufel's request.
My portage tree is from last sunday so mysql-5.1.56 built without issue.
Updated my portage tree and mysql-5.1.56 failed with the same issue's mentioned
above.
Comment 7 Renzo 2012-01-08 06:03:09 UTC
Same issue here as well.

Portage 2.1.10.41 (default/linux/amd64/10.0, gcc-4.5.3, glibc-2.12.2-r0, 2.6.39.3 x86_64)
=================================================================
System uname: Linux-2.6.39.3-x86_64-AMD_Opteron-tm-_Processor_4180-with-gentoo-2.0.3
Timestamp of tree: Sun, 08 Jan 2012 05:30:01 +0000
app-shells/bash:          4.1_p9
dev-lang/python:          2.7.2-r3, 3.1.4-r3
dev-util/cmake:           2.8.6-r4
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.0.3
sys-apps/openrc:          0.8.3-r1
sys-apps/sandbox:         2.4
sys-devel/autoconf:       2.68
sys-devel/automake:       1.11.1
sys-devel/binutils:       2.21.1-r1
sys-devel/gcc:            4.5.3-r1
sys-devel/gcc-config:     1.4.1-r1
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r1
sys-kernel/linux-headers: 2.6.39 (virtual/os-headers)
sys-libs/glibc:           2.12.2
Repositories: gentoo
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS=""
GENTOO_MIRRORS="rsync://rsync.gtlib.gatech.edu/gentoo ftp://ftp.gtlib.gatech.edu/pub/gentoo"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="acl amd64 berkdb bzip2 cli cracklib crypt cups cxx dri fortran gdbm gpm iconv mmx modules mudflap multilib ncurses nls nptl nptlonly openmp pam pcre pppd readline session sse sse2 ssl sysfs tcpd unicode xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga neomagic nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 8 Renzo 2012-01-08 06:09:43 UTC
Created attachment 298299 [details]
Build Log of mysql-5.1.56
Comment 9 michael@smith-li.com 2012-01-08 15:24:15 UTC
Confirming that =dev-db/mysql-5.1.56-r1 does not suffer from this bug. It seems very likely that the old eclass is the root cause.
Comment 10 Jorge Manuel B. S. Vicetto (RETIRED) Gentoo Infrastructure gentoo-dev 2012-01-08 16:24:07 UTC
I've confirmed the 5.1.56 sandbox issues. I'm testing locally to work on a fix.
Comment 11 Jorge Manuel B. S. Vicetto (RETIRED) Gentoo Infrastructure gentoo-dev 2012-01-09 00:20:38 UTC
This was caused by the update to the mysql.eclass to add prefix support and should now be fixed.
You'll have to wait for the update to propagate to the servers.
Comment 12 Jorge Manuel B. S. Vicetto (RETIRED) Gentoo Infrastructure gentoo-dev 2012-01-10 16:52:54 UTC
*** Bug 398179 has been marked as a duplicate of this bug. ***
Comment 13 Jorge Manuel B. S. Vicetto (RETIRED) Gentoo Infrastructure gentoo-dev 2012-01-10 17:04:10 UTC
Let me add the following comment from the duplicated bug report.


The issue reported in this bug, was caused by adding the prefix support to the mysql.eclass, which made the ebuilds using the mysql.eclass to run the following command:

rm -Rf "${ED}/usr/share/info"

As the ebuilds were using EAPI-2, this meant they really run the following:

rm -Rf "/usr/share/info"

Therefore by disabling the sandbox protection, one will allow the ebuilds to remove everything inside /usr/share/info.
If you hit this issue please sync ASAP and do *not* disable sandbox.
Comment 14 Jorge Manuel B. S. Vicetto (RETIRED) Gentoo Infrastructure gentoo-dev 2012-01-11 10:35:36 UTC
*** Bug 398179 has been marked as a duplicate of this bug. ***