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Bug 395969 - [science-overlay] embassy-vienna-1.7.2-r2 fails to fetch embassy-vienna-1.7.2-r2.tar.gz
Summary: [science-overlay] embassy-vienna-1.7.2-r2 fails to fetch embassy-vienna-1.7.2...
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2011-12-25 08:51 UTC by Juergen Rose
Modified: 2015-03-28 17:51 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---

Attachments
embassy-vienna ebuild which solved the issue (embassy-vienna-1.7.2-r2.ebuild,468 bytes, text/plain)
2011-12-25 08:59 UTC, Juergen Rose 		Details
View All Add an attachment (proposed patch, testcase, etc.)

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Description Juergen Rose 2011-12-25 08:51:21 UTC 
'emerge world' fails with:

root@impala:/usr/local/portage/sci-biology(60)# emerge -vuND world

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild     U  ] sci-biology/embassy-vienna-1.7.2-r2 [1.7.2-r1] USE="X mysql%* pdf%* png postgres%* -static-libs%" 0 kB [0=>1]
[ebuild     U  ] sci-biology/embassy-6.3.1 [6.1.0] USE="X%* mysql%* pdf%* png%* postgres%* -static-libs%" 0 kB [0=>2]
Total: 2 packages (2 upgrades), Size of downloads: 0 kB
Portage tree and overlays:
 [0] /usr/portage
 [1] /var/lib/layman/science
 [2] /usr/local/portage
>>> Verifying ebuild manifests
>>> Starting parallel fetch
>>> Emerging (1 of 2) sci-biology/embassy-vienna-1.7.2-r2 from science
 * Fetching files in the background. To view fetch progress, run
 * `tail -f /var/log/emerge-fetch.log` in another terminal.
!!! Fetched file: embassy-vienna-1.7.2-r2.tar.gz VERIFY FAILED!
!!! Reason: Insufficient data for checksum verification
!!! Got:      
!!! Expected: MD5 RMD160 SHA1 SHA256 SHA512 WHIRLPOOL
Comment 1 Juergen Rose 2011-12-25 08:59:24 UTC 
Created attachment 296909 [details]
embassy-vienna ebuild which solved the issue

SRC_URI added and patch disabled. Again after removing Manifest it was possible to emerge embassy-vienna with this ebuild.
Comment 2 Justin Lecher (RETIRED) gentoo-dev 2012-02-20 14:34:03 UTC 
# Justin Lecher <jlec@gentoo.org> (20 Feb 2012)
# They are broken in one or the other way
# Need to be bumped to emboss-6.4.0
sci-biology/emboss::science
sci-biology/embassy::science
sci-biology/embassy-cbstools::science
sci-biology/embassy-domainatrix::science
sci-biology/embassy-domalign::science
sci-biology/embassy-domsearch::science
sci-biology/embassy-emnu::science
sci-biology/embassy-esim4::science
sci-biology/embassy-hmmer::science
sci-biology/embassy-iprscan::science
sci-biology/embassy-mse::science
sci-biology/embassy-phylipnew::science
sci-biology/embassy-signature::science
sci-biology/embassy-structure::science
sci-biology/embassy-topo::science
sci-biology/embassy-vienna::science