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Bug 391691 - sci-biology/embassy-structure: file collisions with gnome-extra/contacts
Summary: sci-biology/embassy-structure: file collisions with gnome-extra/contacts
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2011-11-23 13:53 UTC by Fabio Erculiani (RETIRED)
Modified: 2013-07-21 07:21 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


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Description Fabio Erculiani (RETIRED) gentoo-dev 2011-11-23 13:53:59 UTC
* Messages for package sci-biology/embassy-structure-0.1.0-r4:

 * This package will overwrite one or more files that may belong to other
 * packages (see list below). You can use a command such as `portageq
 * owners / <filename>` to identify the installed package that owns a
 * file. If portageq reports that only one package owns a file then do
 * NOT file a bug report. A bug report is only useful if it identifies at
 * least two or more packages that are known to install the same file(s).
 * If a collision occurs and you can not explain where the file came from
 * then you should simply ignore the collision since there is not enough
 * information to determine if a real problem exists. Please do NOT file
 * a bug report at http://bugs.gentoo.org unless you report exactly which
 * two packages install the same file(s). Once again, please do NOT file
 * a bug report unless you have completely understood the above message.
 * 
 * Detected file collision(s):
 * 
 *      /usr/bin/contacts
 *      /usr/lib/debug/usr/bin/contacts.debug
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * gnome-extra/contacts-0.12
 *      /usr/bin/contacts
 *      /usr/lib/debug/usr/bin/contacts.debug
 * 
 * Package 'sci-biology/embassy-structure-0.1.0-r4' NOT merged due to
 * file collisions. If necessary, refer to your elog messages for the
 * whole content of the above message.

Reproducible: Always
Comment 1 Justin Lecher (RETIRED) gentoo-dev 2012-02-20 14:34:38 UTC
# Justin Lecher <jlec@gentoo.org> (20 Feb 2012)
# They are broken in one or the other way
# Need to be bumped to emboss-6.4.0
sci-biology/emboss::science
sci-biology/embassy::science
sci-biology/embassy-cbstools::science
sci-biology/embassy-domainatrix::science
sci-biology/embassy-domalign::science
sci-biology/embassy-domsearch::science
sci-biology/embassy-emnu::science
sci-biology/embassy-esim4::science
sci-biology/embassy-hmmer::science
sci-biology/embassy-iprscan::science
sci-biology/embassy-mse::science
sci-biology/embassy-phylipnew::science
sci-biology/embassy-signature::science
sci-biology/embassy-structure::science
sci-biology/embassy-topo::science
sci-biology/embassy-vienna::science
Comment 2 Pacho Ramos gentoo-dev 2013-07-21 07:21:14 UTC
gnome-extra/contacts was dropped