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Bug 390715 - sci-libs/ccp4-libs set silly PYTHONPATH (was: net-misc/dropbox fails with "The ebuild phase 'prepare' has exited unexpectedly")
Summary: sci-libs/ccp4-libs set silly PYTHONPATH (was: net-misc/dropbox fails with "Th...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Justin Lecher (RETIRED)
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2011-11-16 10:29 UTC by Justin Lecher (RETIRED)
Modified: 2013-05-03 16:19 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
/var/log/portage/build/net-misc/dropbox-1.2.48:20111116-102851.log (dropbox-1.2.48:20111116-102851.log,2.14 KB, text/plain)
2011-11-16 10:30 UTC, Justin Lecher (RETIRED)
Details

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Description Justin Lecher (RETIRED) gentoo-dev 2011-11-16 10:29:47 UTC
>>> Emerging (1 of 1) net-misc/dropbox-1.2.48
 * dropbox-lnx.x86_64-1.2.48.tar.gz RMD160 SHA1 SHA256 size ;-) ...                                                               [ ok ]
>>> Unpacking source...
>>> Unpacking dropbox-lnx.x86_64-1.2.48.tar.gz to /var/tmp/portage/net-misc/dropbox-1.2.48/work
>>> Source unpacked in /var/tmp/portage/net-misc/dropbox-1.2.48/work
>>> Preparing source in /var/tmp/portage/net-misc/dropbox-1.2.48/work/dropbox-1.2.48 ...
>>> Source prepared.
Traceback (most recent call last):
  File "/usr/lib64/portage/bin/ebuild-ipc.py", line 11, in <module>
    import pickle
  File "/usr/lib64/python2.7/pickle.py", line 34, in <module>
    import struct
  File "/usr/lib64/python2.7/struct.py", line 2, in <module>
    from _struct import _clearcache
ImportError: cannot import name _clearcache
 * The ebuild phase 'prepare' has exited unexpectedly. This type of
 * behavior is known to be triggered by things such as failed variable
 * assignments (bug #190128) or bad substitution errors (bug #200313).
 * Normally, before exiting, bash should have displayed an error message
 * above. If bash did not produce an error message above, it's possible
 * that the ebuild has called `exit` when it should have called `die`
 * instead. This behavior may also be triggered by a corrupt bash binary or
 * a hardware problem such as memory or cpu malfunction. If the problem is
 * not reproducible or it appears to occur randomly, then it is likely to
 * be triggered by a hardware problem. If you suspect a hardware problem
 * then you should try some basic hardware diagnostics such as memtest.
 * Please do not report this as a bug unless it is consistently
 * reproducible and you are sure that your bash binary and hardware are
 * functioning properly.
Comment 1 Justin Lecher (RETIRED) gentoo-dev 2011-11-16 10:30:13 UTC
Created attachment 292743 [details]
/var/log/portage/build/net-misc/dropbox-1.2.48:20111116-102851.log

build.log
Comment 2 Justin Lecher (RETIRED) gentoo-dev 2011-11-16 10:31:25 UTC
Portage 2.2.0_alpha74 (default/linux/amd64/10.0, gcc-4.6.2-asneeded, glibc-2.13-r4, 3.1.1-lh x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-3.1.1-lh-x86_64-Intel-R-_Core-TM-_i7_CPU_860_@_2.80GHz-with-gentoo-2.1
Timestamp of tree: Wed, 16 Nov 2011 08:00:01 +0000
ccache version 3.1.6 [enabled]
app-shells/bash:          4.2_p10
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.5.4-r4, 2.6.7-r2, 2.7.2-r3, 3.1.4-r3, 3.2.2
dev-util/ccache:          3.1.6
dev-util/cmake:           2.8.6-r3
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.1
sys-apps/openrc:          0.9.4
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.9.6-r3, 1.10.3, 1.11.1-r1
sys-devel/binutils:       2.21.1-r1
sys-devel/gcc:            4.2.4-r1, 4.3.6-r1, 4.4.6-r1, 4.5.3-r1, 4.6.2
sys-devel/gcc-config:     1.5-r2
sys-devel/libtool:        2.4-r4
sys-devel/make:           3.82-r3
sys-kernel/linux-headers: 2.6.39 (virtual/os-headers)
sys-libs/glibc:           2.13-r4
Repositories: gentoo sunrise bicatali betagarden dummy neurogeek science last-hope g-ctan
Installed sets: 
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -ftracer -march=corei7 -mcx16 -msahf -mpopcnt -msse4.2 -mtune=corei7 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -mtune=corei7 -frecord-gcc-switches -g -Wimplicit-function-declaration"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/eselect/ /usr/share/gnupg/qualified.txt /usr/share/nano/ /usr/share/openvpn/easy-rsa /var/lib/hsqldb /var/spool/torque"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -ftracer -march=corei7 -mcx16 -msahf -mpopcnt -msse4.2 -mtune=corei7 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -mtune=corei7 -frecord-gcc-switches -g -Wenum-compare"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="-t --jobs=12 --load-average=12 --keep-going --autounmask-write --autounmask --quiet-build=n"
FEATURES="assume-digests binpkg-logs buildsyspkg ccache collision-protect distlocks ebuild-locks fixlafiles metadata-transfer multilib-strict news noinfo parallel-fetch parallel-install preserve-libs protect-owned sandbox sfperms sign split-log splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe -ftracer -march=corei7 -mcx16 -msahf -mpopcnt -msse4.2 -mtune=corei7 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -mtune=corei7 -frecord-gcc-switches -g"
GENTOO_MIRRORS=" /mnt/tmpfs/ http://gentoo.j-schmitz.net/mirror/ ftp://ftp.gentoo.mesh-solutions.com/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo/"
LANG="en_GB.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common"
LINGUAS="en"
MAKEOPTS="-j16 -l12"
PKGDIR="/usr/portage/packages"
PORTAGE_COMPRESS="xz"
PORTAGE_COMPRESS_FLAGS="-z -e -9 -v"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/data/local/sunrise/reviewed /data/local/bicatali /data/local/betagarden /data/local/dummy /data/local/neurogeek /data/local/sci /data/local/lh/ebuilds /data/local/g-ctan"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="64bit 7zip X acpi additions alsa amd64 arpwarp atlas bash-completion berkdb blas branding bzip2 c++ cairo caps cblas ccache cleartype cli command-args consolekit corefonts cracklib crypt cuda cups cupsddk custom-optimization cxx dbus dri dts exif fbcondecor fortran gdbm gif glib glibc-omitfp gmp gnome gnome-keyring gpm graphics gstreamer gtk hddtemp iconv icu ios ipod iproute2 iptables ipv6 ipython javascript jpeg jpeg2k kqemu lapack largefile lcms ldap libnotify libsexy lm_sensors lzma mailtrain md5sum mmx mmxext mng modules mp3 mudflap multilib multiuser nagios-dns nagios-ntp nagios-ping nagios-ssh nano-syntax ncurses network-cron nis nls nptl nptlonly nsplugin objc objc++ opencl opengl openmp openntpd pam pcre pdf png policykit pppd pymol qt-static qt3support readline rrdcgi rrdtool science sensord session smp sqlite sqlite3 sse sse2 sse3 sse4 sse4a sse5 ssl startup-notification svg sysfs system-sqlite tcpd threads tiff truetype type1 udev unicode vaapi vdpau x264 xcb xcomposite xinerama xorg xulrunner zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" DRACUT_MODULES="plymouth" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en" PHP_TARGETS="php5-3" QEMU_SOFTMMU_TARGETS="i386 x86_64" QEMU_USER_TARGETS="i386 x86_64" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_RSYNC_EXTRA_OPTS
Comment 3 Justin Lecher (RETIRED) gentoo-dev 2011-11-17 17:08:17 UTC
any clue portage devs?
Comment 4 Zac Medico gentoo-dev 2011-11-17 17:24:02 UTC
Maybe it's a permission issue with your python install, triggered by FEATURES=userpriv. Do you experience this with other ebuilds besides dropbox?
Comment 5 Justin Lecher (RETIRED) gentoo-dev 2011-11-17 17:49:13 UTC
maybe


390833
Comment 6 Justin Lecher (RETIRED) gentoo-dev 2011-11-21 13:12:49 UTC
>>> Source prepared.
+ ebuild_phase post_src_prepare
+ declare -F post_src_prepare
+ trap - SIGINT SIGQUIT
+ set +x
Traceback (most recent call last):
  File "/usr/lib64/portage/bin/ebuild-ipc.py", line 11, in <module>
    import pickle
  File "/usr/lib64/python2.7/pickle.py", line 34, in <module>
    import struct
  File "/usr/lib64/python2.7/struct.py", line 2, in <module>
    from _struct import _clearcache
ImportError: cannot import name _clearcache
 * The ebuild phase 'prepare' has exited unexpectedly. This type of
 * behavior is known to be triggered by things such as failed variable
 * assignments (bug #190128) or bad substitution errors (bug #200313).
 * Normally, before exiting, bash should have displayed an error message
 * above. If bash did not produce an error message above, it's possible
 * that the ebuild has called `exit` when it should have called `die`
 * instead. This behavior may also be triggered by a corrupt bash binary or
 * a hardware problem such as memory or cpu malfunction. If the problem is
 * not reproducible or it appears to occur randomly, then it is likely to
 * be triggered by a hardware problem. If you suspect a hardware problem
 * then you should try some basic hardware diagnostics such as memtest.
 * Please do not report this as a bug unless it is consistently
 * reproducible and you are sure that your bash binary and hardware are
 * functioning properly.
+ source /etc/portage/bashrc
+ set +x
+ for x in '${MISC_FUNCTIONS_ARGS}'
+ die_hooks
+ [[ -f /var/tmp/portage/net-misc/dropbox-1.2.24-r1/.die_hooks ]]
Comment 7 Justin Lecher (RETIRED) gentoo-dev 2011-11-21 13:13:17 UTC
debug output of that section. Nothing interesting.
Comment 8 Zac Medico gentoo-dev 2011-11-21 14:52:25 UTC
(In reply to comment #4)
> Maybe it's a permission issue with your python install, triggered by
> FEATURES=userpriv.

It could also be a sandbox problem. Try with FEATURES="-sandbox -usersandbox".
Comment 9 Justin Lecher (RETIRED) gentoo-dev 2011-11-21 15:02:11 UTC
Doesn't help either
Comment 10 Justin Lecher (RETIRED) gentoo-dev 2012-01-13 13:27:44 UTC
It gets better:


>>> Source prepared.
Error processing line 1 of /usr/lib64/python2.7/site-packages/abrt.pth:

  Traceback (most recent call last):
    File "/usr/lib64/python2.7/site.py", line 164, in addpackage
      exec line
    File "<string>", line 1, in <module>
    File "/usr/lib64/python2.7/site-packages/abrt_exception_handler.py", line 28, in <module>
      import socket
    File "/usr/lib64/python2.7/socket.py", line 49, in <module>
      from functools import partial
    File "/usr/lib64/python2.7/functools.py", line 10, in <module>
      from _functools import partial, reduce
  ImportError: cannot import name reduce

Remainder of file ignored
Error processing line 1 of /usr/lib64/python2.7/site-packages/abrt.pth:

  Traceback (most recent call last):
    File "/usr/lib64/python2.7/site.py", line 164, in addpackage
      exec line
    File "<string>", line 1, in <module>
    File "/usr/lib64/python2.7/site-packages/abrt_exception_handler.py", line 28, in <module>
      import socket
    File "/usr/lib64/python2.7/socket.py", line 49, in <module>
      from functools import partial
    File "/usr/lib64/python2.7/functools.py", line 10, in <module>
      from _functools import partial, reduce
  ImportError: cannot import name reduce

Remainder of file ignored
Traceback (most recent call last):
  File "/usr/lib64/portage/bin/ebuild-ipc.py", line 11, in <module>
    import pickle
  File "/usr/lib64/python2.7/pickle.py", line 34, in <module>
    import struct
  File "/usr/lib64/python2.7/struct.py", line 2, in <module>
    from _struct import _clearcache
ImportError: cannot import name _clearcache


This is defently a problem with the buildsystem
Comment 11 Justin Lecher (RETIRED) gentoo-dev 2012-01-13 14:25:29 UTC
So the problem is that $S contains something which lets emerge break. here the list:

 # ls /var/tmp/portage/net-misc/dropbox-1.2.48-r1/work/dropbox-1.2.48/src/.dropbox-dist/
ACKNOWLEDGEMENTS         dropbox*             libstdc++.so.6*                        resource.so*
array.so*                dropboxd*            libwx_baseud-2.8.so.0*                 select.so*
binascii.so*             fastpath.so*         libwx_baseud_net-2.8.so.0*             setuptools-0.6c11-py2.5.egg
_bisect.so*              faulthandler.so*     libwx_baseud_xml-2.8.so.0*             _speedups.so*
bz2.so*                  fcntl.so*            libwx_gtk2ud_adv-2.8.so.0*             strop.so*
_codecs_cn.so*           _functools.so*       libwx_gtk2ud_core-2.8.so.0*            _struct.so*
_codecs_hk.so*           grp.so*              libwx_gtk2ud_qa-2.8.so.0*              termios.so*
_codecs_iso2022.so*      _heapq.so*           libz.so.1*                             time.so*
_codecs_jp.so*           icons/               _locale.so*                            unicodedata.so*
_codecs_kr.so*           itertools.so*        _lsprof.so*                            VERSION
_codecs_tw.so*           libbz2.so.1.0*       math.so*                               _weakref.so*
collections.so*          libcrypto.so.0.9.8*  _multibytecodec.so*                    wx._controls_.so*
cPickle.so*              libpng12.so.0*       netifaces-0.5-py2.5-linux-x86_64.egg/  wx._core_.so*
cStringIO.so*            libpopt.so.0*        operator.so*                           wx._gdi_.so*
_ctypes.so*              library.zip*         parser.so*                             wx._misc_.so*
datetime.so*             _librsync.so*        pyexpat.so*                            wx._windows_.so*
_dbus_bindings.so*       librsync.so.1*       _random.so*
_dbus_glib_bindings.so*  libssl.so.0.9.8*     README
Comment 12 Justin Lecher (RETIRED) gentoo-dev 2012-02-15 19:19:52 UTC
I suspect that some packages set eval PYTHONPATH here. I will test around this.
Comment 13 Justin Lecher (RETIRED) gentoo-dev 2013-05-03 16:19:58 UTC
+*ccp4-libs-6.1.3-r12 (03 May 2013)
+
+  03 May 2013; Justin Lecher <jlec@gentoo.org> +ccp4-libs-6.1.3-r12.ebuild,
+  +files/6.1.3-no-pypath.patch:
+  Bump to EAPI=5 and new python eclasses, respect AR and RANLIB, #446350; drop
+  silly PYTHONPATH from init files, #390715
+