Phylip (PHYlogeny Inference Package) is a program package inferring phylogenies, written by Joseph Felsenstein at the University of Washington. Reproducible: Always Steps to Reproduce: 1. 2. 3.
Created attachment 24147 [details] ebuild for v 3.6_beta of Phylip
Created attachment 24148 [details] digest for v 3.6_beta of Phylip
Apparently, I forgot to mention that although this is a beta version, the program's author (all-mighty Joe Felsenstein) strongly encourages its use. Even the alpha version was very reliable.
I think many scientists would not want to use this beta version for producing results for publication. To make sure those who want can play with the beta while, at the same time, keeping the old version, we could make this package SLOTable. Here are two ebuilds for versions 3.5 and 3.6_beta1 that use the SLOT feature. Programs are installed in: /usr/phylip/3.x/bin. The relevant directory is added to PATH through the env file 24phylip. If both packages are installed, 24phylip adds the last installed version to PATH. Every user can override this by adding "export PATH=/usr/phylip/3.x/bin:$PATH" to his .bashrc.
Created attachment 32425 [details] phylip-3.5-r1.ebuild - SLOTable ebuild
Created attachment 32426 [details] phylip-3.6_beta1.ebuild - SLOTable ebuild
Created attachment 32441 [details] phylip-3.6_beta1.ebuild - Corrected SLOTable ebuild There was a bug in my first 2.6 beta ebuild (I used PV instead of SLOT for determining DESTDIR, and PV includes the _beta1 part of the version). This corrected ebuild fixes that.
Commited the new stable 3.6 version.
