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Bug 383501 - app-misc/ca-certificates: update-ca-certificates warns of duplicate IGC_A.pem
Summary: app-misc/ca-certificates: update-ca-certificates warns of duplicate IGC_A.pem
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo's Team for Core System packages
URL:
Whiteboard:
Keywords:
: 416557 (view as bug list)
Depends on:
Blocks:
 
Reported: 2011-09-18 14:40 UTC by David J Cozatt
Modified: 2012-05-19 16:33 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments

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Description David J Cozatt 2011-09-18 14:40:52 UTC
penguin4 david # update-ca-certificates 
Updating certificates in /etc/ssl/certs... WARNING: Skipping duplicate file IGC_A.pem
156 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d....done.

This system was built from the latest minimal cd in the last month. Set ~amd64 and updated.



Reproducible: Always




n4 david # emerge -p ca-certificates

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild   R    ] app-misc/ca-certificates-20110502-r4  0 kB

Total: 1 package (1 reinstall), Size of downloads: 0 kB
penguin4 david # emerge --info ca-certificates
Portage 2.1.10.18 (default/linux/amd64/10.0/desktop/gnome, gcc-4.5.3, glibc-2.13-r4, 3.0.4-gentoo x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-3.0.4-gentoo-x86_64-AMD_Phenom-tm-_II_X4_B50_Processor-with-gentoo-2.0.3
Timestamp of tree: Sat, 17 Sep 2011 14:45:01 +0000
app-shells/bash:          4.2_p10
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.2-r3, 3.2.2
dev-util/cmake:           2.8.5-r2
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.0.3
sys-apps/openrc:          0.9.3-r1
sys-apps/sandbox:         2.5
sys-devel/autoconf:       2.13, 2.68
sys-devel/automake:       1.11.1-r1
sys-devel/binutils:       2.21.1-r1
sys-devel/gcc:            4.5.3-r1
sys-devel/gcc-config:     1.4.1-r1
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r1
sys-kernel/linux-headers: 2.6.39 (virtual/os-headers)
sys-libs/glibc:           2.13-r4
Repositories:

gentoo
    location: /usr/portage
    sync: rsync://rsync26.us.gentoo.org/gentoo-portage
    priority: -1000

ABI="amd64"
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
ACCEPT_PROPERTIES="*"
ALSA_CARDS="hda-intel"
ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol"
APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias"
ARCH="amd64"
ASFLAGS_x86="--32"
AUTOCLEAN="yes"
CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump"
CAMERAS="ptp2"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -ggdb -D_FORTIFY_SOURCE=2 -mtune=amdfam10"
CFLAGS_x86="-m32"
CHOST="x86_64-pc-linux-gnu"
CHOST_amd64="x86_64-pc-linux-gnu"
CHOST_x86="i686-pc-linux-gnu"
CLEAN_DELAY="5"
COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog"
COLLISION_IGNORE="/lib/modules"
COLORTERM="gnome-terminal"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -ggdb -D_FORTIFY_SOURCE=2 -mtune=amdfam10"
DEFAULT_ABI="amd64"
DESKTOP_SESSION="gnome"
DISPLAY=":0.0"
DISTDIR="/usr/portage/distfiles"
EDITOR="/bin/nano"
ELIBC="glibc"
EMERGE_DEFAULT_OPTS="--verbose"
EMERGE_WARNING_DELAY="10"
EPREFIX=""
EROOT="/"
FCFLAGS="-march=native -O2 -ggdb -D_FORTIFY_SOURCE=2 -mtune=amdfam10"
FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles fixpackages multilib-strict news parallel-fetch protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox"
FETCHCOMMAND="/usr/bin/wget -t 3 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}""
FETCHCOMMAND_RSYNC="rsync -avP "${URI}" "${DISTDIR}/${FILE}""
FETCHCOMMAND_SFTP="bash -c "x=\${2#sftp://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port=22 ; exec sftp -P \${port} \"\${host}:/\${x#*/}\" \"\$1\"" sftp "${DISTDIR}/${FILE}" "${URI}""
FETCHCOMMAND_SSH="bash -c "x=\${2#ssh://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port=22 ; exec rsync --rsh=\"ssh -p\${port}\" -avP \"\${host}:/\${x#*/}\" \"\$1\"" rsync "${DISTDIR}/${FILE}" "${URI}""
FFLAGS="-march=native -O2 -ggdb -D_FORTIFY_SOURCE=2 -mtune=amdfam10"
GCC_SPECS=""
GDK_USE_XFT="1"
GDMSESSION="gnome"
GDM_LANG="en_US.UTF-8"
GDM_XSERVER_LOCATION="local"
GENTOO_MIRRORS="ftp://gentoo.chem.wisc.edu/gentoo/ http://www.gtlib.gatech.edu/pub/gentoo"
GNOME_DESKTOP_SESSION_ID="this-is-deprecated"
GNOME_KEYRING_CONTROL="/tmp/keyring-iVVVSC"
GNOME_KEYRING_PID="2741"
GPG_AGENT_INFO="/tmp/keyring-iVVVSC/gpg:0:1"
GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx"
GRUB_PLATFORMS=""
GSETTINGS_BACKEND="dconf"
HOME="/root"
INFOPATH="/usr/share/info:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.21.1/info:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.3/info:/usr/share/info/emacs-23"
INPUT_DEVICES="evdev keyboard mouse"
JAVAC="/etc/java-config-2/current-system-vm/bin/javac"
JAVA_HOME="/etc/java-config-2/current-system-vm"
JDK_HOME="/etc/java-config-2/current-system-vm"
KERNEL="linux"
LANG="en_US.UTF-8"
LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LDFLAGS_x86="-m elf_i386"
LESS="-R -M --shift 5"
LESSOPEN="|lesspipe %s"
LIBDIR_amd64="lib64"
LIBDIR_amd64_fbsd="lib64"
LIBDIR_ppc="lib32"
LIBDIR_ppc64="lib64"
LIBDIR_s390="lib32"
LIBDIR_s390x="lib64"
LIBDIR_sparc32="lib32"
LIBDIR_sparc64="lib64"
LIBDIR_x86="lib32"
LIBDIR_x86_fbsd="lib32"
LINGUAS="en en_US en_GB"
LOGNAME="root"
LS_COLORS="rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:"
MAKEOPTS="-j5 --load-average"
MANPATH="/etc/java-config-2/current-system-vm/man:/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.21.1/man:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.3/man:/etc/java-config/system-vm/man/"
MULTILIB_ABIS="amd64 x86"
MULTILIB_STRICT_DENY="64-bit.*shared object"
MULTILIB_STRICT_DIRS="/lib32 /lib /usr/lib32 /usr/lib /usr/kde/*/lib32 /usr/kde/*/lib /usr/qt/*/lib32 /usr/qt/*/lib /usr/X11R6/lib32 /usr/X11R6/lib"
MULTILIB_STRICT_EXEMPT="(perl5|gcc|gcc-lib|binutils|eclipse-3|debug|portage|udev)"
NETBEANS="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml"
OPENGL_PROFILE="xorg-x11"
ORBIT_SOCKETDIR="/tmp/orbit-root"
PAGER="/usr/bin/less"
PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.3"
PHP_TARGETS="php5-3"
PKGDIR="/usr/portage/packages"
PORTAGE_ARCHLIST="ppc sparc64-freebsd ppc-openbsd x86-openbsd ppc64 x86-winnt x86-fbsd ppc-aix alpha arm x86-freebsd s390 amd64 arm-linux x86-macos x64-openbsd ia64-hpux hppa x86-netbsd x86-cygwin amd64-linux ia64-linux x86 sparc-solaris x64-freebsd sparc64-solaris x86-linux x64-macos sparc m68k-mint ia64 mips ppc-macos x86-interix hppa-hpux amd64-fbsd x64-solaris mips-irix m68k sh x86-solaris sparc-fbsd"
PORTAGE_BINHOST_CHUNKSIZE="3000"
PORTAGE_BIN_PATH="/usr/lib64/portage/bin"
PORTAGE_COMPRESS_EXCLUDE_SUFFIXES="css gif htm[l]? jp[e]?g js pdf png"
PORTAGE_CONFIGROOT="/"
PORTAGE_DEBUG="0"
PORTAGE_DEPCACHEDIR="/var/cache/edb/dep"
PORTAGE_ELOG_CLASSES="watn info error log qa"
PORTAGE_ELOG_MAILFROM="portage@localhost"
PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}"
PORTAGE_ELOG_MAILURI="root"
PORTAGE_ELOG_SYSTEM="mail:warn,error syslog:* save"
PORTAGE_FETCH_CHECKSUM_TRY_MIRRORS="5"
PORTAGE_FETCH_RESUME_MIN_SIZE="350K"
PORTAGE_GID="250"
PORTAGE_GPG_SIGNING_COMMAND="gpg --sign --clearsign --yes --default-key "${PORTAGE_GPG_KEY}" --homedir "${PORTAGE_GPG_DIR}" "${FILE}""
PORTAGE_INST_GID="0"
PORTAGE_INST_UID="0"
PORTAGE_IONICE_COMMAND="ionice -c 3 -p ${PID}"
PORTAGE_NICENESS="3"
PORTAGE_PYM_PATH="/usr/lib64/portage/pym"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_RSYNC_RETRIES="-1"
PORTAGE_SANDBOX_COMPAT_LEVEL="16"
PORTAGE_SYNC_STALE="30"
PORTAGE_TMPDIR="/var/tmp"
PORTAGE_VERBOSE="1"
PORTAGE_WORKDIR_MODE="0700"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
PORT_LOGDIR="/var/log/portage"
PORT_LOGDIR_CLEAN="find "${PORT_LOGDIR}" -type f ! -name "summary.log*" -mtime +7 -delete"
PRELINK_PATH_MASK="/usr/lib64/libfreebl3.so:/usr/lib64/libnssdbm3.so:/usr/lib64/libsoftokn3.so"
PROFILE_ONLY_VARIABLES="ARCH ELIBC KERNEL USERLAND"
PWD="/home/david"
PYTHONDONTWRITEBYTECODE="1"
RESUMECOMMAND="/usr/bin/wget -c -t 3 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}""
RESUMECOMMAND_RSYNC="rsync -avP "${URI}" "${DISTDIR}/${FILE}""
RESUMECOMMAND_SSH="bash -c "x=\${2#ssh://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port=22 ; exec rsync --rsh=\"ssh -p\${port}\" -avP \"\${host}:/\${x#*/}\" \"\$1\"" rsync "${DISTDIR}/${FILE}" "${URI}""
ROOT="/"
ROOTPATH="/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.3"
RPMDIR="/usr/portage/rpm"
RUBY_TARGETS="ruby18 ree18"
SESSION_MANAGER="local/penguin4:@/tmp/.ICE-unix/2821,unix/penguin4:/tmp/.ICE-unix/2821"
SHELL="/bin/bash"
SHLVL="3"
SSH_AGENT_PID="2838"
SSH_AUTH_SOCK="/tmp/keyring-iVVVSC/ssh"
STAGE1_USE="multilib nptl nptlonly unicode"
SYMLINK_LIB="yes"
SYNC="rsync://rsync26.us.gentoo.org/gentoo-portage"
TERM="xterm"
USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo caps cdda cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr eds emboss encode evo exif fam firefox flac fortran gallium gdbm gdu gif gnome gnome-keyring gpm gstreamer gtk2 iconv introspection ipv6 jpeg lcms ldap libnotify mad mmx mng modules mp3 mp4 mpeg mudflap multilib nautilus ncurses nls nptl nptlonly ogg opengl openmp pam pango pcre pdf perl png policykit polkit ppds pppd pulseaudio python qt3support qt4 readline sdl session spell sse sse2 ssl startup-notification svg sysfs tcpd tiff truetype udev unicode usb vorbis x264 xcb xml xorg xulrunner xv xvid zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en en_US en_GB" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18 ree18" USERLAND="GNU" VIDEO_CARDS="radeon r300 r600" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
USER="root"
USERLAND="GNU"
USERNAME="david"
USE_EXPAND="ALSA_CARDS ALSA_PCM_PLUGINS APACHE2_MODULES APACHE2_MPMS CALLIGRA_FEATURES CAMERAS COLLECTD_PLUGINS CROSSCOMPILE_OPTS DRACUT_MODULES DVB_CARDS ELIBC FCDSL_CARDS FOO2ZJS_DEVICES FRITZCAPI_CARDS GPSD_PROTOCOLS GRUB_PLATFORMS INPUT_DEVICES KERNEL LCD_DEVICES LINGUAS LIRC_DEVICES MISDN_CARDS NETBEANS_MODULES NGINX_MODULES_HTTP NGINX_MODULES_MAIL OFED_DRIVERS PHP_TARGETS QEMU_SOFTMMU_TARGETS QEMU_USER_TARGETS RUBY_TARGETS SANE_BACKENDS USERLAND VIDEO_CARDS XFCE_PLUGINS XTABLES_ADDONS"
USE_EXPAND_HIDDEN="CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND"
USE_ORDER="env:pkg:conf:defaults:pkginternal:repo:env.d"
VIDEO_CARDS="radeon r300 r600"
WINDOWID="50331651"
WINDOWPATH="7"
XAUTHORITY="/tmp/libgksu-BcMEIc/.Xauthority"
XDG_CONFIG_DIRS="/etc/xdg"
XDG_DATA_DIRS="/usr/local/share:/usr/share:/usr/share/gdm"
XDG_MENU_PREFIX="gnome-"
XDG_SESSION_COOKIE="e361e1ffccc2cbd8f3d7aac300000011-1316326750.435385-1072902777"
XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
_="/usr/bin/emerge"

=================================================================
                        Package Settings
=================================================================

app-misc/ca-certificates-20110502-r4 was built with the following:
USE="(multilib)"
Comment 1 David J Cozatt 2011-09-18 14:58:34 UTC
https://bugs.gentoo.org/show_bug.cgi?id=245984 is 3 years old. A patch is attached. Have not tested it. Looks to enhance the command by removing broken 
symlinks. Sounds useful.
Comment 2 David J Cozatt 2012-05-11 01:13:24 UTC
First I have done this since the original bug report.

penguin4 david # update-ca-certificates --fresh
Clearing symlinks in /etc/ssl/certs...done.
Updating certificates in /etc/ssl/certs... WARNING: Skipping duplicate file IGC_A.pem
164 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d....done.
penguin4 david # date
Thu May 10 21:12:27 EDT 2012
Comment 3 SpanKY gentoo-dev 2012-05-11 08:33:49 UTC
i think this is fixed with app-misc/ca-certificates-20120212
Comment 4 David J Cozatt 2012-05-12 03:26:37 UTC
Indeed it is. Thank you Mr Frysinger and Mr Ruger.

penguin4 dev-libs # update-ca-certificates --fresh
Clearing symlinks in /etc/ssl/certs...done.
Updating certificates in /etc/ssl/certs... 151 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d....done.
penguin4 dev-libs # eix ca-certificates
[I] app-misc/ca-certificates
     Available versions:  20090709 (~)20110421 (~)20110502 20110502-r1 (~)20110502-r2 (~)20110502-r3 (~)20110502-r4 20111025 (~)20120212
     Installed versions:  20120212(10:42:06 PM 05/11/2012)
     Homepage:            http://packages.debian.org/sid/ca-certificates
     Description:         Common CA Certificates PEM files
Comment 5 SpanKY gentoo-dev 2012-05-19 16:33:47 UTC
*** Bug 416557 has been marked as a duplicate of this bug. ***