'emerge mayavi' fails with: ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-visualization/mayavi-4.0.0/work/mayavi-4.0.0 ... * Building of sci-visualization/mayavi-4.0.0 with CPython 2.7... python2.7 setup.py build -b build-2.7 running build Traceback (most recent call last): File "setup.py", line 497, in <module> **config File "/usr/lib/python2.7/site-packages/numpy/distutils/core.py", line 186, in setup return old_setup(**new_attr) File "/usr/lib/python2.7/distutils/core.py", line 152, in setup dist.run_commands() File "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commands self.run_command(cmd) File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "setup.py", line 303, in run build_tvtk_classes_zip() File "setup.py", line 290, in build_tvtk_classes_zip gen_tvtk_classes_zip() File "tvtk/setup.py", line 46, in gen_tvtk_classes_zip from code_gen import TVTKGenerator File "tvtk/code_gen.py", line 10, in <module> import vtk File "/usr/lib/python2.7/site-packages/vtk/__init__.py", line 76, in <module> __helper.refine_import_err('hybrid', 'vtkHybridPython', exc) File "/usr/lib/python2.7/site-packages/vtk/__helper.py", line 32, in refine_import_err raise LinkError, str(exc) vtk.__helper.LinkError: /usr/lib/libvtkParallel.so.5.6: undefined symbol: _ZN17FOFHaloProperties13setParametersERKSsffff * ERROR: sci-visualization/mayavi-4.0.0 failed (compile phase): Reproducible: Always root@thinkpad:/usr/src(195)# emerge --info =sci-visualization/mayavi-4.0.0 Portage 2.1.10.11 (default/linux/x86/10.0/desktop, gcc-4.5.3, glibc-2.13-r4, 3.0.1 i686) ================================================================= System Settings ================================================================= System uname: Linux-3.0.1-i686-Intel-R-_Pentium-R-_M_processor_2.00GHz-with-gentoo-2.0.3 Timestamp of tree: Sun, 28 Aug 2011 08:00:01 +0000 ccache version 3.1.6 [disabled] app-shells/bash: 4.2_p10 dev-java/java-config: 2.1.11-r3 dev-lang/python: 2.7.2-r2, 3.2-r2 dev-util/ccache: 3.1.6 dev-util/cmake: 2.8.5-r2 dev-util/pkgconfig: 0.26 sys-apps/baselayout: 2.0.3 sys-apps/openrc: 0.8.3-r1 sys-apps/sandbox: 2.5 sys-devel/autoconf: 2.13, 2.68 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.1-r1 sys-devel/binutils: 2.21.1-r1 sys-devel/gcc: 4.5.3-r1 sys-devel/gcc-config: 1.4.1-r1 sys-devel/libtool: 2.4-r1 sys-devel/make: 3.82-r1 sys-kernel/linux-headers: 2.6.39 (virtual/os-headers) sys-libs/glibc: 2.13-r4 Repositories: gentoo arcon java-overlay lordvan science sunrise x11 local x-cpan g-octave ACCEPT_KEYWORDS="x86 ~x86" ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1 skype-eula googleearth AdobeFlash-10.1 cadsoft" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=pentium-m -fomit-frame-pointer" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.0/conf /usr/share/openvpn/easy-rsa /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.2/ext-active/ /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.2/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.2/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -march=pentium-m -fomit-frame-pointer" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FFLAGS="-O2 -march=pentium-m -fomit-frame-pointer" GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ rsync://ftp.fi.muni.cz/pub/linux/gentoo ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo rsync://gd.tuwien.ac.at/opsys/linux/gentoo ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo http://gentoo.oregonstate.edu" LANG="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="de fr" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages/" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/arcon /var/lib/layman/java-overlay /var/lib/layman/lordvan /var/lib/layman/science /var/lib/layman/sunrise /var/lib/layman/x11 /usr/local/portage /var/lib/cpan /var/lib/g-octave" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="R X Xaw3d a52 aac abiword accessibility acl acpi admin afs alsa amrr ao apache2 applet archive arpack asf aspell assistant audacious audiofile automap automount bash-completion beagle berkdb blas blast bluetooth boo boost branding bzip2 cairo cardbus cdda cddb cdf cdio cdparanoia cdr cgi chm cli consolekit corba cracklib crypt css cups curl cxx daap db dbase dbi dbm dbus declarative designer devhelp device-mapper dga dia djvu doc dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds elf emacs emboss emf encode epiphany evo examples exif expat extensions extra extras fam ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpx fts3 fuse galago garmin gd gdal gdbm gdu gedit geoip geolocation geos gfortran gif gimp ginac git glade glib glpk gml gmp gmtsuppl gnome gnome-keyring gnome-print gnuplot gnutls gphoto2 gpm grammar graphics graphtft graphviz grass gs gsl gsm gstreamer gtk gudev guile harness hddtemp hdf hdf5 hdri http httpd hwdb iconv icq icu id3 ide imagemagick imap innodb inotify ipod ipv6 irda ithreads jabber jadetex java java6 jbig john jpeg jpeg2k kdrive kerberos kpathsea ladspa lame lapack laptop latex latex3 lcms ldap lensfun libffi libgda libnotify libsamplerate lirc lua lzo mad madwifi mail maildir mapnik math matroska mkl mmx mmxext mng modules mono moonlight motif mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numpy obex objc ocaml octave odbc ogdi ogg ole openexr opengl openmp overview pam pango pcre pda pdf perl plotutils plugins png podcast policykit portaudio posix postgres postscript ppds pppd preview-latex proj projectx pstricks pulseaudio python python-bindings q16 q32 qemu qhull qt3support qt4 quicktime readline reiserfs reports rle romio rpc rrdcgi rrdtool sage samba sasl science sdk sdl secure-delete semantic-desktop server session sip slang slp smbclient sms sndfile snmp soup sox speex spell sql sqlite sse sse2 ssl startup-notification stlport subtitles subversion suexec svg svm swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs tgif theora thinkpad threads thunderbird tidy tiff tk tntc tools truetype udev unicode usb userlocales utempter v4l2 vaapi video virtualbox vorbis wav webdav webdav-serf webkit wifi win32codecs wmf wxwidgets x264 x86 xattr xcb xemacs xext xft xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc yaml zlib zvbi" ALSA_CARDS="intel8x0 ac97_codec emu10k1 emu10k1x" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="canon" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" DVB_CARDS="usb-wt220u" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" PHP_TARGETS="php5-3" QEMU_SOFTMMU_TARGETS="i386 ppc ppc64 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="radeon vesa displaylink" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS root@thinkpad:/usr/src(196)# emerge -pqv =sci-visualization/mayavi-4.0.0 [ebuild N ] sci-visualization/mayavi-4.0.0 USE="examples -test"
Created attachment 284959 [details] /var/tmp/portage/sci-visualization/mayavi-4.0.0/temp/build.log
Could it be an interference of paraview again? If it is the case I will really have to get to the bottom of it. We cannot have the two vtks interfering forever. Other interesting info I'd like, output of ldd /usr/lib/libvtkParallel.so.5.6
I hit the error a again at a new new system: >>> Emerging (6 of 6) sci-visualization/mayavi-4.0.0 * mayavi-4.0.0.tar.gz RMD160 SHA1 SHA256 size ;-) ... [ ok ] >>> Unpacking source... >>> Unpacking mayavi-4.0.0.tar.gz to /var/tmp/portage/sci-visualization/mayavi-4.0.0/work >>> Source unpacked in /var/tmp/portage/sci-visualization/mayavi-4.0.0/work >>> Preparing source in /var/tmp/portage/sci-visualization/mayavi-4.0.0/work/mayavi-4.0.0 ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-visualization/mayavi-4.0.0/work/mayavi-4.0.0 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-visualization/mayavi-4.0.0/work/mayavi-4.0.0 ... * Building of sci-visualization/mayavi-4.0.0 with CPython 2.7... python2.7 setup.py build -b build-2.7 running build Traceback (most recent call last): File "setup.py", line 497, in <module> ... File "/usr/lib64/python2.7/site-packages/vtk/__helper.py", line 32, in refine_import_err raise LinkError, str(exc) vtk.__helper.LinkError: /usr/lib64/python2.7/site-packages/PyQt4/QtCore.so: undefined symbol: _ZN7QLocale14scriptToStringENS_6ScriptE * ERROR: sci-visualization/mayavi-4.0.0 failed (compile phase): root@wildcat:/root(11)# emerge --info =sci-visualization/mayavi-4.0.0 Portage 2.1.10.44 (default/linux/amd64/10.0/desktop, gcc-4.5.3, glibc-2.14.1-r2, 3.1.6-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.1.6-gentoo-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T7300_@_2.00GHz-with-gentoo-2.1 Timestamp of tree: Sun, 08 Jan 2012 08:30:01 +0000 app-shells/bash: 4.2_p20 dev-java/java-config: 2.1.11-r3 dev-lang/python: 2.7.2-r3, 3.2.2 dev-util/cmake: 2.8.6-r4 dev-util/pkgconfig: 0.26 sys-apps/baselayout: 2.1 sys-apps/openrc: 0.9.8 sys-apps/sandbox: 2.5 sys-devel/autoconf: 2.13, 2.68 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.2 sys-devel/binutils: 2.22-r1 sys-devel/gcc: 4.5.3-r2 sys-devel/gcc-config: 1.5-r2 sys-devel/libtool: 2.4.2 sys-devel/make: 3.82-r3 sys-kernel/linux-headers: 3.2 (virtual/os-headers) sys-libs/glibc: 2.14.1-r2 Repositories: gentoo sunrise lordvan science x-portage x-cpan x-g-octave ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1 skype-eula googleearth AdobeFlash-10.1 cadsoft Oracle-BCLA-JavaSE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FFLAGS="" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="de fr" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/sunrise /var/lib/layman/lordvan /var/lib/layman/science /usr/local/portage /var/lib/cpan /var/lib/g-octave" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="64bit R X Xaw3d a52 aac acl acpi afs alsa amd64 ao apache2 applet archive arpack asf aspell assistant atlas audacious audiofile automap automount bash-completion berkdb blas blast bluetooth boost branding bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cli consolekit cracklib crypt css cups curl cxx daap db dbase dbi dbm dbus declarative designer devhelp device-mapper dga dia dirac djvu doc dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds elf emacs emboss emf encode epiphany evo examples exif expat extensions extra extras faac fam ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpx fts3 fuse gd gdal gdbm gdu gedit geoip geolocation geos gfortran gif gimp ginac git glade glib glpk gml gmp gmtsuppl gnome gnome-keyring gnome-print gnuplot gnutls gphoto2 gpm grammar graphics graphtft graphviz grass gs gsl gsm gstreamer gtk gudev guile hddtemp hdf hdf5 hdri http httpd hvm hwdb iconv icq icu id3 ide imagemagick imap innodb inotify ipod ipv6 ithreads jabber jadetex jbig john jpeg jpeg2k kdrive kerberos kpathsea kqemu kvm ladspa lame lapack laptop latex latex3 lcms ldap lensfun libffi libgda libnotify libsamplerate lua lzo mad mail maildir mapnik math matroska mkl mmx mng modules mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap multilib musicbrainz mysql mysqli nautilus ncurses netcdf netpbm network networking networkmanager nfs nls nptl nptlonly nsplugin ntp numpy obex objc ocaml ocr octave odbc ogdi ogg ole openexr opengl openmp overview pam pango pcre pda pdf perl plotutils plugins png podcast policykit portaudio posix postgres postscript ppds pppd preview-latex proj projectx pstricks pulseaudio python python-bindings q16 q32 qemu qhull qt3support qt4 quicktime readline reiserfs reports rle romio rpc rrdcgi rrdtool samba sasl schroedinger science sdk sdl secure-delete semantic-desktop server session sip slang slp smbclient smp sms sndfile snmp soup sox speex spell sql sqlite sse sse2 ssl ssse3 startup-notification subtitles subversion suexec svg svm swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs tgif theora thinkpad threads thunderbird tidy tiff tk tools truetype udev unicode usb userlocales vaapi video virtualbox vorbis wav webdav webdav-serf webkit wifi wmf wxwidgets x264 xattr xcb xemacs xext xft xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc yaml zlib zvbi" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" DVB_CARDS="usb-wt220u" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" PHP_TARGETS="php5-3" QEMU_SOFTMMU_TARGETS="i386 ppc ppc64 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS root@wildcat:/root(13)# qlist -Iv vtk sci-libs/vtk-5.8.0
root@wildcat:/root(14)# ldd /usr/lib/libvtkParallel.so.5.8.0 linux-vdso.so.1 => (0x00007fff3a3ff000) libvtkRendering.so.5.8 => /usr/lib64/libvtkRendering.so.5.8 (0x00007f80ae780000) libvtkIO.so.5.8 => /usr/lib64/libvtkIO.so.5.8 (0x00007f80ae029000) libVPIC.so.5.8 => /usr/lib64/libVPIC.so.5.8 (0x00007f80addfe000) libCosmo.so.5.8 => /usr/lib64/libCosmo.so.5.8 (0x00007f80adbcd000) libGL.so.1 => /usr/lib64/libGL.so.1 (0x00007f80ad96b000) libvtkexoIIc.so.5.8 => /usr/lib64/libvtkexoIIc.so.5.8 (0x00007f80ad720000) libmpi_cxx.so.1 => /usr/lib64/libmpi_cxx.so.1 (0x00007f80ad504000) libmpi.so.1 => /usr/lib64/libmpi.so.1 (0x00007f80ad190000) libvtkGraphics.so.5.8 => /usr/lib64/libvtkGraphics.so.5.8 (0x00007f80ac80f000) libvtkImaging.so.5.8 => /usr/lib64/libvtkImaging.so.5.8 (0x00007f80ac29b000) libvtkFiltering.so.5.8 => /usr/lib64/libvtkFiltering.so.5.8 (0x00007f80abd04000) libvtkCommon.so.5.8 => /usr/lib64/libvtkCommon.so.5.8 (0x00007f80ab7ec000) libvtksys.so.5.8 => /usr/lib64/libvtksys.so.5.8 (0x00007f80ab5b1000) libm.so.6 => /lib64/libm.so.6 (0x00007f80ab32f000) libvtkNetCDF.so.5.8 => /usr/lib64/libvtkNetCDF.so.5.8 (0x00007f80ab05d000) libstdc++.so.6 => /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/libstdc++.so.6 (0x00007f80aad5d000) libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f80aab47000) libc.so.6 => /lib64/libc.so.6 (0x00007f80aa7b8000) libvtkftgl.so.5.8 => /usr/lib64/libvtkftgl.so.5.8 (0x00007f80aa5ac000) libfreetype.so.6 => /usr/lib64/libfreetype.so.6 (0x00007f80aa30d000) libQtGui.so.4 => /usr/lib64/qt4/libQtGui.so.4 (0x00007f80a9689000) libQtCore.so.4 => /usr/lib64/qt4/libQtCore.so.4 (0x00007f80a91f3000) libz.so.1 => /lib64/libz.so.1 (0x00007f80a8fdd000) libpng15.so.15 => /usr/lib64/libpng15.so.15 (0x00007f80a8dae000) libXt.so.6 => /usr/lib64/libXt.so.6 (0x00007f80a8b46000) libX11.so.6 => /usr/lib64/libX11.so.6 (0x00007f80a8804000) libpq.so.5 => /usr/lib64/libpq.so.5 (0x00007f80a85d6000) libmysqlclient.so.16 => /usr/lib64/libmysqlclient.so.16 (0x00007f80a8251000) libiodbc.so.2 => /usr/lib64/libiodbc.so.2 (0x00007f80a7ffc000) libvtkDICOMParser.so.5.8 => /usr/lib64/libvtkDICOMParser.so.5.8 (0x00007f80a7de0000) libvtkNetCDF_cxx.so => /usr/lib64/libvtkNetCDF_cxx.so (0x00007f80a7bbf000) libvtkmetaio.so.5.8 => /usr/lib64/libvtkmetaio.so.5.8 (0x00007f80a7935000) libvtksqlite.so.5.8 => /usr/lib64/libvtksqlite.so.5.8 (0x00007f80a76bd000) libjpeg.so.8 => /usr/lib64/libjpeg.so.8 (0x00007f80a746c000) libtiff.so.5 => /usr/lib64/libtiff.so.5 (0x00007f80a71fa000) libexpat.so.1 => /usr/lib64/libexpat.so.1 (0x00007f80a6fcf000) libogg.so.0 => /usr/lib64/libogg.so.0 (0x00007f80a6dc8000) libtheoraenc.so.1 => /usr/lib64/libtheoraenc.so.1 (0x00007f80a6b9b000) libtheoradec.so.1 => /usr/lib64/libtheoradec.so.1 (0x00007f80a698a000) libavformat.so.53 => /usr/lib64/libavformat.so.53 (0x00007f80a6686000) libavcodec.so.53 => /usr/lib64/libavcodec.so.53 (0x00007f80a5986000) libavutil.so.51 => /usr/lib64/libavutil.so.51 (0x00007f80a5764000) libswscale.so.2 => /usr/lib64/libswscale.so.2 (0x00007f80a5525000) libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f80a5308000) libglapi.so.0 => /usr/lib64/libglapi.so.0 (0x00007f80a50e3000) libXext.so.6 => /usr/lib64/libXext.so.6 (0x00007f80a4ecf000) libXdamage.so.1 => /usr/lib64/libXdamage.so.1 (0x00007f80a4ccb000) libXfixes.so.3 => /usr/lib64/libXfixes.so.3 (0x00007f80a4ac4000) libXxf86vm.so.1 => /usr/lib64/libXxf86vm.so.1 (0x00007f80a48be000) libX11-xcb.so.1 => /usr/lib64/libX11-xcb.so.1 (0x00007f80a46bb000) libxcb-glx.so.0 => /usr/lib64/libxcb-glx.so.0 (0x00007f80a44a4000) libxcb.so.1 => /usr/lib64/libxcb.so.1 (0x00007f80a4285000) libdrm.so.2 => /usr/lib64/libdrm.so.2 (0x00007f80a4078000) libdl.so.2 => /lib64/libdl.so.2 (0x00007f80a3e74000) libnsl.so.1 => /lib64/libnsl.so.1 (0x00007f80a3c5c000) libutil.so.1 => /lib64/libutil.so.1 (0x00007f80a3a58000) libvtkverdict.so.5.8 => /usr/lib64/libvtkverdict.so.5.8 (0x00007f80a3821000) libR.so => /usr/lib64/R/lib/libR.so (0x00007f80a32f4000) /lib64/ld-linux-x86-64.so.2 (0x00007f80af2d9000) libbz2.so.1 => /lib64/libbz2.so.1 (0x00007f80a30e3000) libglib-2.0.so.0 => /usr/lib64/libglib-2.0.so.0 (0x00007f80a2dbf000) libSM.so.6 => /usr/lib64/libSM.so.6 (0x00007f80a2bb5000) libICE.so.6 => /usr/lib64/libICE.so.6 (0x00007f80a2998000) libXrender.so.1 => /usr/lib64/libXrender.so.1 (0x00007f80a278d000) libXrandr.so.2 => /usr/lib64/libXrandr.so.2 (0x00007f80a2583000) libfontconfig.so.1 => /usr/lib64/libfontconfig.so.1 (0x00007f80a234c000) libgthread-2.0.so.0 => /usr/lib64/libgthread-2.0.so.0 (0x00007f80a2147000) librt.so.1 => /lib64/librt.so.1 (0x00007f80a1f3d000) libssl.so.1.0.0 => /usr/lib64/libssl.so.1.0.0 (0x00007f80a1cda000) libcrypto.so.1.0.0 => /usr/lib64/libcrypto.so.1.0.0 (0x00007f80a1928000) libkrb5.so.3 => /usr/lib64/libkrb5.so.3 (0x00007f80a165a000) libcom_err.so.2 => /lib64/libcom_err.so.2 (0x00007f80a1456000) libgssapi_krb5.so.2 => /usr/lib64/libgssapi_krb5.so.2 (0x00007f80a1217000) libldap_r-2.4.so.2 => /usr/lib64/libldap_r-2.4.so.2 (0x00007f80a0fc7000) libcrypt.so.1 => /lib64/libcrypt.so.1 (0x00007f80a0d90000) libjbig.so => /usr/lib64/libjbig.so (0x00007f80a0b83000) libgnutls.so.26 => /usr/lib64/libgnutls.so.26 (0x00007f80a08d6000) libva.so.1 => /usr/lib64/libva.so.1 (0x00007f80a06be000) libxvidcore.so.4 => /usr/lib64/libxvidcore.so.4 (0x00007f80a03a4000) libx264.so.120 => /usr/lib64/libx264.so.120 (0x00007f80a0059000) libvorbisenc.so.2 => /usr/lib64/libvorbisenc.so.2 (0x00007f809fb89000) libvorbis.so.0 => /usr/lib64/libvorbis.so.0 (0x00007f809f95d000) libvo-amrwbenc.so.0 => /usr/lib64/libvo-amrwbenc.so.0 (0x00007f809f740000) libvo-aacenc.so.0 => /usr/lib64/libvo-aacenc.so.0 (0x00007f809f51f000) libspeex.so.1 => /usr/lib64/libspeex.so.1 (0x00007f809f305000) libschroedinger-1.0.so.0 => /usr/lib64/libschroedinger-1.0.so.0 (0x00007f809f057000) libopenjpeg.so.1.4 => /usr/lib64/libopenjpeg.so.1.4 (0x00007f809ee36000) libopencore-amrwb.so.0 => /usr/lib64/libopencore-amrwb.so.0 (0x00007f809ec1f000) libopencore-amrnb.so.0 => /usr/lib64/libopencore-amrnb.so.0 (0x00007f809e9ee000) libmp3lame.so.0 => /usr/lib64/libmp3lame.so.0 (0x00007f809e773000) libgsm.so.1 => /usr/lib64/libgsm.so.1 (0x00007f809e567000) libfaac.so.0 => /usr/lib64/libfaac.so.0 (0x00007f809e354000) libdirac_encoder.so.0 => /usr/lib64/libdirac_encoder.so.0 (0x00007f809e0c5000) libXau.so.6 => /usr/lib64/libXau.so.6 (0x00007f809dec1000) libXdmcp.so.6 => /usr/lib64/libXdmcp.so.6 (0x00007f809dcba000) librefblas.so => /usr/lib64/librefblas.so (0x00007f809da3a000) libreadline.so.6 => /lib64/libreadline.so.6 (0x00007f809d7f3000) libpcre.so.0 => /lib64/libpcre.so.0 (0x00007f809d598000) liblzma.so.5 => /usr/lib64/liblzma.so.5 (0x00007f809d375000) libicuuc.so.48 => /usr/lib64/libicuuc.so.48 (0x00007f809d009000) libicui18n.so.48 => /usr/lib64/libicui18n.so.48 (0x00007f809cc38000) libgomp.so.1 => /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/libgomp.so.1 (0x00007f809ca2a000) libuuid.so.1 => /lib64/libuuid.so.1 (0x00007f809c825000) libk5crypto.so.3 => /usr/lib64/libk5crypto.so.3 (0x00007f809c5fa000) libkrb5support.so.0 => /usr/lib64/libkrb5support.so.0 (0x00007f809c3f1000) libkeyutils.so.1 => /lib64/libkeyutils.so.1 (0x00007f809c1ec000) libresolv.so.2 => /lib64/libresolv.so.2 (0x00007f809bfd5000) liblber-2.4.so.2 => /usr/lib64/liblber-2.4.so.2 (0x00007f809bdc6000) libsasl2.so.2 => /usr/lib64/libsasl2.so.2 (0x00007f809bba8000) libtasn1.so.3 => /usr/lib64/libtasn1.so.3 (0x00007f809b997000) libgcrypt.so.11 => /usr/lib64/libgcrypt.so.11 (0x00007f809b718000) libgpg-error.so.0 => /usr/lib64/libgpg-error.so.0 (0x00007f809b513000) liborc-0.4.so.0 => /usr/lib64/liborc-0.4.so.0 (0x00007f809b297000) libgfortran.so.3 => /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/libgfortran.so.3 (0x00007f809afaf000) libncurses.so.5 => /lib64/libncurses.so.5 (0x00007f809ad5a000) libicudata.so.48 => /usr/lib64/libicudata.so.48 (0x00007f80999eb000)
I should have asked for ldd -r to see if there were any missing libraries. Sorry.
Does this work with latest vrk and mayavi?
Now it works here with vtk-5.8.0 and even with atlas-3.9.68.
