Trying to emerge =net-fs/samba-3.5.11 which got unmasked today on amd64 (don't know about other platforms) gives: Calculating dependencies... done! >>> Verifying ebuild manifests !!! A file is not listed in the Manifest: '/usr/portage/net-fs/samba/files/3.6/system-auth-winbind.pam' Reproducible: Always Steps to Reproduce: 1. Execute 'emerge =net-fs/samba-3.5.11' as root 2. 3. Actual Results: emerge stopped giving the message above. Expected Results: emerge samba. Portage 2.1.10.3 (default/linux/amd64/10.0/desktop/gnome, gcc-4.4.5, glibc-2.12.2-r0, 2.6.39-gentoo-r3 x86_64) ================================================================= System uname: Linux-2.6.39-gentoo-r3-x86_64-Intel-R-_Core-TM-_i5_CPU_750_@_2.67GHz-with-gentoo-2.0.3 Timestamp of tree: Tue, 16 Aug 2011 15:00:01 +0000 distcc 3.1 x86_64-pc-linux-gnu [disabled] app-shells/bash: 4.1_p9 dev-java/java-config: 2.1.11-r3 dev-lang/python: 2.7.1-r1, 3.1.3-r1 dev-util/cmake: 2.8.4-r1 dev-util/pkgconfig: 0.26 sys-apps/baselayout: 2.0.3 sys-apps/openrc: 0.8.3-r1 sys-apps/sandbox: 2.4 sys-devel/autoconf: 2.13, 2.68 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.1 sys-devel/binutils: 2.20.1-r1 sys-devel/gcc: 4.4.5 sys-devel/gcc-config: 1.4.1-r1 sys-devel/libtool: 2.4-r1 sys-devel/make: 3.82 sys-kernel/linux-headers: 2.6.36.1 (virtual/os-headers) sys-libs/glibc: 2.12.2 Repositories: gentoo proaudio dustin ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FFLAGS="" GENTOO_MIRRORS="ftp://ftp.df.lth.se/pub/gentoo ftp://ftp.klid.dk/gentoo http://ftp.klid.dk/ftp/gentoo" LANG="en_GB.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="en pl" MAKEOPTS="-j5" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/pro-audio /var/lib/layman/dustin" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X a52 aac acl acpi alsa amd64 bash-completion berkdb branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cue cxx dbus dmx dri dts dvd dvdr eds emacs emboss encode evo exif fam firefox flac fontconfig fortran gdbm gdu gif gnome gnome-keyring gpm gstreamer gtk iconv jack java javascript jpeg lcms ldap libnotify mad mmx mng modules mp3 mp4 mpeg mudflap multilib nautilus ncurses nls nptl nptlonly nsplugin ogg opengl openmp pam pango pcre pdf perl png policykit ppds pppd python qt3support qt4 readline samba sdl session spell sse sse2 ssl startup-notification svg symlink sysfs tcpd threads tiff truetype udev unicode usb v4l2 vorbis wavpack wifi x264 xcb xml xorg xulrunner xv xvid zlib" ALSA_CARDS="emu10k1" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="braindump flow karbon kexi kpresenter krita tables words" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en pl" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="fglrx fbdev vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
interesting, I just tried a world update and got a different file not listed in the manifests error. >>> Verifying ebuild manifests !!! A file is not listed in the Manifest: '/usr/portage/net-fs/samba/files/3.6/swat.xinetd'
There was an abnormal situation in the manifest creation, we are still trying to recreate the failure to avoid it in the future. In the meantime a fixed manifest has been committed and should hit the rsync mirrors within the next minutes. Have fun!