I get the following: # emerge -p --depclean * Depclean may break link level dependencies. Thus, it is * recommended to use a tool such as `revdep-rebuild` (from * app-portage/gentoolkit) in order to detect such breakage. * * Always study the list of packages to be cleaned for any obvious * mistakes. Packages that are part of the world set will always * be kept. They can be manually added to this set with * `emerge --noreplace <atom>`. Packages that are listed in * package.provided (see portage(5)) will be removed by * depclean, even if they are part of the world set. * * As a safety measure, depclean will not remove any packages * unless *all* required dependencies have been resolved. As a * consequence, it is often necessary to run `emerge --update * --newuse --deep @world` prior to depclean. Calculating dependencies... done! >>> Calculating removal order... >>> These are the packages that would be unmerged: !!! 'app-editors/nano' (virtual/editor) is part of your system profile. !!! Unmerging it may be damaging to your system. app-editors/nano selected: 2.2.5 protected: none omitted: none app-editors/vim selected: 7.3.189 protected: none omitted: none sys-power/hibernate-script selected: 2.0-r2 protected: none omitted: none www-plugins/nspluginwrapper selected: 1.4.2 protected: none omitted: none All selected packages: app-editors/vim-7.3.189 www-plugins/nspluginwrapper-1.4.2 app-editors/nano-2.2.5 sys-power/hibernate-script-2.0-r2 >>> 'Selected' packages are slated for removal. >>> 'Protected' and 'omitted' packages will not be removed. Packages installed: 1165 Packages in world: 243 Packages in system: 51 Required packages: 1161 Number to remove: 4 # emerge -pv vim gvim These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild R ] app-editors/vim-7.3.189 USE="X acl bash-completion gpm nls perl python -cscope -debug -minimal -ruby -vim-pager" 0 kB [ebuild R ] app-editors/gvim-7.3.189 USE="acl bash-completion gnome gpm gtk nls perl python (-aqua) -cscope -debug -motif -neXt -netbeans -ruby" 0 kB Total: 2 packages (2 reinstalls), Size of downloads: 0 kB Reproducible: Always Portage 2.1.10.3 (default/linux/amd64/10.0/desktop/gnome, gcc-4.4.5, glibc-2.12.2-r0, 2.6.38-tuxonice-r2 x86_64) ================================================================= System uname: Linux-2.6.38-tuxonice-r2-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T9300_@_2.50GHz-with-gentoo-2.0.2 Timestamp of tree: Fri, 15 Jul 2011 09:00:01 +0000 ccache version 2.4 [enabled] app-shells/bash: 4.1_p9 dev-java/java-config: 2.1.11-r3 dev-lang/python: 2.7.1-r1 dev-util/ccache: 2.4-r9 dev-util/cmake: 2.8.4-r1 dev-util/pkgconfig: 0.26 sys-apps/baselayout: 2.0.2 sys-apps/openrc: 0.8.3-r1 sys-apps/sandbox: 2.4 sys-devel/autoconf: 2.13, 2.68 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.1 sys-devel/binutils: 2.20.1-r1 sys-devel/gcc: 4.4.5 sys-devel/gcc-config: 1.4.1-r1 sys-devel/libtool: 2.2.10 sys-devel/make: 3.82 sys-kernel/linux-headers: 2.6.36.1 (virtual/os-headers) sys-libs/glibc: 2.12.2 Repositories: gentoo sunrise x-portage ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -march=native" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe -march=native" DISTDIR="/usr/distfiles" FEATURES="assume-digests binpkg-logs ccache distlocks ebuild-locks fixlafiles fixpackages multilib-strict news parallel-fetch protect-owned sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FFLAGS="" GENTOO_MIRRORS="ftp://ftp.free.fr/mirrors/ftp.gentoo.org" LANG="es_ES.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="es es_ES en_US" MAKEOPTS="-j3" PKGDIR="/usr/local/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/portage/local/layman/sunrise /usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X a52 aac acl acpi alsa amd64 avahi bash-completion berkdb bluetooth branding bzip2 cairo cdda cdr cleartype cli consolekit cracklib crypt cups cxx daap dbus dell djvu dri dts dvd dvdr dvi eds emboss encode evo exif fam fat ffmpeg firefox flac fortran fuse gdbm gdu gif git gnome gnome-keyring gpm gstreamer gtk gtkstyle hddtemp iconv ieee1394 ipod java jpeg kpathsea laptop latex lcdfilter lcms libnotify lm_sensors lyx lzma mad mmx mmxext mng modules mono mp3 mp4 mpeg mudflap multilib musicbrainz nautilus ncurses network network-cron networkmanager nls nptl nptlonly ntfs nvidia ogg opengl openmp pam pango pch pcre pdf perl pidgin png policykit ppds pppd python qt3support readline reiserfs sdl session sound spell sse sse2 sse3 sse4 ssl ssse3 startup-notification subversion svg sysfs t1lib tcpd test threads tiff truetype udev unicode usb v4l2 vdpau vorbis webkit wifi x264 xattr xcb xml xmp xorg xpm xulrunner xv xvid zeroconf zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="braindump flow karbon kexi kpresenter krita tables words" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="es es_ES en_US" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia nv" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
It seems like you need to add app-editors/vim to world if you want to keep it. Looking at the dependencies of app-editors/gvim-7.3.189, it pulls in ~app-editors/vim-core-7.3.189 as a dependency, but not app-editors/vim.
Ups, sorry a lot, I didn't remember vim-core stuff