after upgrade, my system have heavy problem because a lot of pakages failes cuz missing: gnome-mplayer gnome-mplayer: error while loading shared libraries: libxcb-atom.so.1: cannot open shared object file: No such file or directory Reproducible: Always Portage 2.1.9.46 (default/linux/amd64/10.0/desktop, gcc-4.5.2, libc-0-r0, 2.6.38-gentoo-r3 x86_64) ================================================================= System uname: Linux-2.6.38-gentoo-r3-x86_64-Intel-R-_Core-TM-2_Duo_CPU_P9700_@_2.80GHz-with-gentoo-2.0.2 Timestamp of tree: Tue, 26 Apr 2011 12:00:01 +0000 app-shells/bash: 4.2_p8 dev-java/java-config: 2.1.11-r3 dev-lang/python: 2.7.1-r1, 3.1.3-r1, 3.2 dev-util/cmake: 2.8.4-r1 sys-apps/baselayout: 2.0.2 sys-apps/openrc: 0.8.2 sys-apps/sandbox: 2.5 sys-devel/autoconf: 2.13, 2.68 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.1-r1 sys-devel/binutils: 2.21 sys-devel/gcc: 4.5.2 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.4-r1 sys-devel/make: 3.82 sys-kernel/linux-headers: 2.6.38 virtual/os-headers: 0 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=core2 -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/boot/grub/40_custom /etc /etc/X11/Sessions/awesome /etc/X11/Sessions/dwm /etc/X11/xorg.conf /etc/apache2/httpd.conf /etc/conf.d/hwclock /etc/conf.d/keymaps /etc/default/grub /etc/fstab /etc/grub.d/05_theme /etc/make.conf /etc/xdg/openbox/autostart.sh /etc/xdg/openbox/menu.xml /etc/xdg/openbox/rc.xml /etc/xdg/openbox/start /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.0/conf /usr/share/openvpn/easy-rsa /usr/share/xsessions/openbox.desktop /var/bind /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=core2 -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests binpkg-logs buildpkg distlocks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FFLAGS="" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="de_DE.UTF-8" LC_ALL="" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="de en vi" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/portage/local/layman/emacs /usr/portage/local/layman/lorelei /usr/portage/local/layman/lxde /usr/portage/local/layman/mellon /usr/portage/local/layman/java-overlay /usr/portage/local/layman/nikai /usr/portage/local/layman/qting-edge /usr/portage/local/layman/roslin /usr/portage/local/layman/scarabeus /usr/portage/local/layman/techwolf /usr/portage/local/layman/mgorny /usr/portage/local/layman/bleeding-edge /usr/portage/local/layman/science /usr/portage/local/layman/amielke-overlay /usr/portage/local/layman/hwoarang /usr/portage/local/layman/poly-c /usr/portage/local/layman/gnome /usr/portage/local/layman/wirelay /usr/portage/local/layman/mpd /usr/portage/local/local-overlay" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="*+ X a52 aac aalib accessibility acl acpi adns afs aim alsa amd64 ao apache2 ass atm audio audiofile bash-completion beagle berkdb bidi bluetooth branding bzip2 cairo caps cdda cdio cdparanoia cdr cgi cjk clamdtop cli clisp consolekit cracklib crypt cscope css csv cups curl curlwrappers cvs cxx dbus dc1394 dga dhcp dhcpcd dia dirac directfb dmx dri dts dv dvd dvdr dvi emacs emboss enca encode enscript exceptions exif expat extras faac faad fam fastcgi fbcon ffmpeg firefox flac flash fortran ftp fuse gcj gd gdbm gdu geoip ggi gif gimp git glib gmp gnome gnome-keyring gnutls gphoto2 gpm graphviz gs gstreamer gtk gtk3 gzip hash hddtemp highlight httpd iconv icq icu idn ieee1394 imagemagick imap imlib introspection ipv6 ithreads jabber jack java java6 javascript jingle joystick jpeg jpeg2k kde kerberos lame lapack latex lcms ldap libcaca libnotify libwww live logrotate lua lzo mad maildir matroska mbrola md5sum memlimit mercurial mhash midi mikmod milter mime mjpeg mmap mmx mmxext mng modules mono motif mp3 mp4 mpeg mplayer msn mudflap mule multilib musepack mysql nas nautilus ncurses netboot network networkmanager nfs nls nptl nptlonly nsplugin nvidia ogg ogg123 openal openexr opengl openmp oss pam pango pcap pcmcia pcre pdf perl php pic pidgin png policykit posix postgres ppds pppd ps pulseaudio python qt3support qt4 quicktime radio rar raw rdesktop readline reflection rss rtc rtsp ruby samba sasl savedconfig schroedinger sdl sdl-image session sip slang slp smp soap sockets sox spamassassin speex spell spl sqlite sqlite3 sse sse2 ssl ssse3 startup-notification stream stun subversion svg swat sysfs syslog sysvipc tcl tcpd theora threads tidy tiff timidity tk tokenizer truetype udev unicode urandom usb userlocales v4l2 vcd vhosts video vim-syntax vlm vnc vorbis wav wavpack webkit wifi wma wmf wxwidgets x264 xattr xcb xcomposite xft xinerama xinetd xml xmlrpc xorg xpm xscreensaver xsl xulrunner xv xvid xvmc yahoo zip zlib zsh-completion" ALSA_CARDS="hda_intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation php5 proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" APACHE2_MPMS="worker" CAMERAS="canon" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard synaptics evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de en vi" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18 jruby" USERLAND="GNU" VIDEO_CARDS="nv nvidia vesa fbdev vga nouveau" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
locate libxcb-atom.so.1 /usr/lib64/libxcb-atom.so.1 /usr/lib64/libxcb-atom.so.1.0.0 show that its there, but system still throws erros that it does not exist
(In reply to comment #1) > locate libxcb-atom.so.1 > /usr/lib64/libxcb-atom.so.1 > /usr/lib64/libxcb-atom.so.1.0.0 > > > show that its there, but system still throws erros that it does not exist ah this files dont exist its a old updatedb ls /usr/lib64/libxcb-atom.so.1 ls: cannot access /usr/lib64/libxcb-atom.so.1: No such file or directory
outdated locate database? use revdep-rebuild for "missing .so" problems.
Revdep-rebuild fails on pulseaudio because of implicit declaration of xcb_atom_get (which seems obviously a function of libxcb-atom-so.1. Moreover, there is a xcb-atom.pc file, which means that the lib still exists, but seems not be built.
Maybe a xcb-atom subpackage has been forgotten during the split ?
I see similar problems here: /usr/lib64/libstartup-notification-1.so: undefined reference to `xcb_atom_get' collect2: ld returned 1 exit status make[3]: *** [test-ditem] Error 1 make[3]: Leaving directory `/var/tmp/portage/gnome-base/gnome-desktop-2.32.1/work/gnome-desktop-2.32.1/libgnome-desktop' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/var/tmp/portage/gnome-base/gnome-desktop-2.32.1/work/gnome-desktop-2.32.1/libgnome-desktop' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/var/tmp/portage/gnome-base/gnome-desktop-2.32.1/work/gnome-desktop-2.32.1' make: *** [all] Error 2 emake failed * ERROR: gnome-base/gnome-desktop-2.32.1 failed (compile phase)
(In reply to comment #4) > Revdep-rebuild fails on pulseaudio because of implicit declaration of > xcb_atom_get (which seems obviously a function of libxcb-atom-so.1. File a own bug for pulseaudio. (In reply to comment #6) > I see similar problems here: > > /usr/lib64/libstartup-notification-1.so: undefined reference to `xcb_atom_get' > collect2: ld returned 1 exit status > make[3]: *** [test-ditem] Error 1 > make[3]: Leaving directory > `/var/tmp/portage/gnome-base/gnome-desktop-2.32.1/work/gnome-desktop-2.32.1/libgnome-desktop' > make[2]: *** [all-recursive] Error 1 > make[2]: Leaving directory > `/var/tmp/portage/gnome-base/gnome-desktop-2.32.1/work/gnome-desktop-2.32.1/libgnome-desktop' > make[1]: *** [all-recursive] Error 1 > make[1]: Leaving directory > `/var/tmp/portage/gnome-base/gnome-desktop-2.32.1/work/gnome-desktop-2.32.1' > make: *** [all] Error 2 > emake failed > * ERROR: gnome-base/gnome-desktop-2.32.1 failed (compile phase) startup-notification is bug 364931.
If using Portage 2.2 the file is preserved by preserved-libs feature, here, for startup-notification. $ qfile -v libxcb-atom.so x11-libs/xcb-util-0.3.8 (/usr/lib64/libxcb-atom.so) $ qfile -v libxcb-atom.so.1 x11-libs/xcb-util-0.3.8 (/usr/lib64/libxcb-atom.so.1) The xcb-util should NOT install libxcb-atom.so* anymore, despite the pkg-config file being installed. It only has this anyway: Libs: -L${libdir} -lxcb-util So this bug is still INVALID, it's just that startup-notification AND pulseaudio are both broken now, and people need to run revdep-rebuild or @preserved-rebuild
*** This bug has been confirmed by popular vote. ***
(In reply to comment #3) > outdated locate database? use revdep-rebuild for "missing .so" problems. could u also fix this : http://bugs.gentoo.org/show_bug.cgi?id=364965 this bufg is so nasty because i let so lots application crash. i have mad a extra bud report for pulseaudio
This command has helped me ln -s /usr/lib/libxcb.so.1.1.0 /usr/lib/libxcb-atom.so.1
(In reply to comment #8) > If using Portage 2.2 the file is preserved by preserved-libs feature, here, for > startup-notification. > > $ qfile -v libxcb-atom.so > x11-libs/xcb-util-0.3.8 (/usr/lib64/libxcb-atom.so) > $ qfile -v libxcb-atom.so.1 > x11-libs/xcb-util-0.3.8 (/usr/lib64/libxcb-atom.so.1) > > The xcb-util should NOT install libxcb-atom.so* anymore, despite the pkg-config > file being installed. It only has this anyway: > > Libs: -L${libdir} -lxcb-util > > So this bug is still INVALID, it's just that startup-notification AND > pulseaudio are both broken now, and people need to run revdep-rebuild or > @preserved-rebuild Those libraries should use package config instead of directly linking against libxcb-atom. Is there a bug filed to update them? Moreover, I'm having an issue with x11-libs/libgksu not building. Either the ebuild should be fixed, or it should say that it conflicts with versions of xcb-util>=0.3.8
