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Bug 363823 - unpack_makeself - file: could not find any magic files! due to local /usr/local/zend/lib/libmagic.so.1
Summary: unpack_makeself - file: could not find any magic files! due to local /usr/loc...
Status: RESOLVED INVALID
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: x86 Linux
: Normal normal (vote)
Assignee: Gentoo Linux bug wranglers
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2011-04-16 13:44 UTC by Max S. Makarov
Modified: 2011-04-20 20:07 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
complete build.log (build.log,2.19 KB, text/plain)
2011-04-18 04:18 UTC, Max S. Makarov
Details
environment (environment,158.29 KB, text/plain)
2011-04-18 04:19 UTC, Max S. Makarov
Details
emerge debug nvidia-drivers (emerge-debug-nvidia-arivers.log,283.79 KB, text/plain)
2011-04-18 06:54 UTC, Max S. Makarov
Details
file.strace (file.strace,2.79 KB, text/plain)
2011-04-20 11:30 UTC, Max S. Makarov
Details

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Description Max S. Makarov 2011-04-16 13:44:26 UTC
app-emulation/virtualbox-bin, x11-drivers/nvidia-drivers and other programs which packed with makeself can't be unpacked.

Reproducible: Always

Steps to Reproduce:
1. emerge -1av x11-drivers/nvidia-drivers or some other package which use unpack_makeself




 * Messages for package x11-drivers/nvidia-drivers-260.19.29:

 * Unknown filetype "" ?
 * ERROR: x11-drivers/nvidia-drivers-260.19.29 failed (unpack phase):
 *   failure unpacking () makeself NVIDIA-Linux-x86-260.19.29.run ('1.6.0-nv' +903)
 * 
 * Call stack:
 *               ebuild.sh, line   56:  Called src_unpack
 *             environment, line 4156:  Called unpack_makeself
 *             environment, line 4811:  Called assert 'failure unpacking () makeself NVIDIA-Linux-x86-260.19.29.run ('1.6.0-nv' +903)'
 *   isolated-functions.sh, line   14:  Called die
 * The specific snippet of code:
 *              [[ $x -eq 0 ]] || die "$@"
 * 
 * If you need support, post the output of 'emerge --info =x11-drivers/nvidia-drivers-260.19.29',
 * the complete build log and the output of 'emerge -pqv =x11-drivers/nvidia-drivers-260.19.29'.
 * The complete build log is located at '/mnt/sda8/x32.var.tmp/portage/x11-drivers/nvidia-drivers-260.19.29/temp/build.log'.
 * The ebuild environment file is located at '/mnt/sda8/x32.var.tmp/portage/x11-drivers/nvidia-drivers-260.19.29/temp/environment'.
 * S: '/mnt/sda8/x32.var.tmp/portage/x11-drivers/nvidia-drivers-260.19.29/work/'



 * Messages for package app-emulation/virtualbox-bin-4.0.2:

 * Unknown filetype "" ?
 * ERROR: app-emulation/virtualbox-bin-4.0.2 failed (unpack phase):
 *   failure unpacking () makeself VirtualBox-4.0.2-69518-Linux_x86.run ('2.1.5' +9664)
 * 
 * Call stack:
 *               ebuild.sh, line   56:  Called src_unpack
 *             environment, line 2486:  Called unpack_makeself 'VirtualBox-4.0.2-69518-Linux_x86.run'
 *             environment, line 2983:  Called assert 'failure unpacking () makeself VirtualBox-4.0.2-69518-Linux_x86.run ('2.1.5' +9664)'
 *   isolated-functions.sh, line   14:  Called die
 * The specific snippet of code:
 *              [[ $x -eq 0 ]] || die "$@"
 * 
 * If you need support, post the output of 'emerge --info =app-emulation/virtualbox-bin-4.0.2',
 * the complete build log and the output of 'emerge -pqv =app-emulation/virtualbox-bin-4.0.2'.
 * The complete build log is located at '/mnt/sda8/x32.var.tmp/portage/app-emulation/virtualbox-bin-4.0.2/temp/build.log'.
 * The ebuild environment file is located at '/mnt/sda8/x32.var.tmp/portage/app-emulation/virtualbox-bin-4.0.2/temp/environment'.
 * S: '/mnt/sda8/x32.var.tmp/portage/app-emulation/virtualbox-bin-4.0.2/work'
Comment 1 Max S. Makarov 2011-04-16 13:45:47 UTC
localhost ~ # emerge --info
Portage 2.1.9.42 (default/linux/x86/10.0, gcc-4.4.5, glibc-2.11.3-r0, 2.6.36-gentoo-r8 i686)
=================================================================
System uname: Linux-2.6.36-gentoo-r8-i686-AMD_Athlon-tm-_64_X2_Dual_Core_Processor_4400+-with-gentoo-1.12.14
Timestamp of tree: Sat, 16 Apr 2011 12:30:01 +0000
ccache version 2.4 [enabled]
app-shells/bash:     4.1_p9
dev-java/java-config: 2.1.11-r3
dev-lang/python:     2.6.6-r2, 3.1.3-r1
dev-util/ccache:     2.4-r9
dev-util/cmake:      2.8.1-r2
sys-apps/baselayout: 1.12.14-r1
sys-apps/sandbox:    2.4
sys-devel/autoconf:  2.13, 2.65-r1
sys-devel/automake:  1.7.9-r1, 1.8.5-r3, 1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:  2.20.1-r1
sys-devel/gcc:       4.3.4, 4.4.5
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.10
sys-devel/make:      3.81-r2
sys-kernel/linux-headers: 2.6.36.1
virtual/os-headers:  2.6.36.1 (sys-kernel/linux-headers)
ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="* -@EULA"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=k8 -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0 /var/bind /var/lib/hsqldb /var/qmail/alias /var/qmail/control"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5.2/ext-active/ /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.2/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.2/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=k8 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs ccache collision-protect distlocks fixlafiles fixpackages metadata-transfer news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS=""
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="ru_RU.UTF-8"
LC_ALL=""
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="ru en"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/ltsp /var/lib/layman/sunrise /usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="3dnow 3dnowext 3gpp X acl alsa bash-completion berkdb bzip2 cdr cli consolekit cracklib crypt cups cxx dbus doc dri dvd dvdr emovix encode fame ffmpeg flac fortran gdbm gif gnome gnome-keyring gpm gstreamer gtk gtk2 iconv id3tag ithreads java jpeg jpeg2k kde lame lcms libnotify mmx modules mp3 mpeg mudflap ncurses nls nptl nptlonly ogg opengl openmp oss pam pcre perl png pppd profile python qt3support qt4 quicktime readline sdl session slang sound spell sql sqlite sse sse2 sse3 ssh ssl ssse3 startup-notification svg sysfs taglib tcpd theora threads tiff tk truetype udev unicode usb v4l v4l2 vcd vorbis webkit win32codecs x86 xcomposite xml xorg xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" APACHE2_MPMS="worker" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="ru en" NETBEANS_MODULES="php profiler webcommon ide java websvccommon nb harness cnd dlight" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia nv nouveau vesa fbdev v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 2 Jeroen Roovers (RETIRED) gentoo-dev 2011-04-18 04:06:00 UTC
You have done the first of these so far:

 * If you need support, post the output of 'emerge --info
=x11-drivers/nvidia-drivers-260.19.29',
 * the complete build log and the output of 'emerge -pqv
=x11-drivers/nvidia-drivers-260.19.29'.
 * The complete build log is located at
'/mnt/sda8/x32.var.tmp/portage/x11-drivers/nvidia-drivers-260.19.29/temp/build.log'.
 * The ebuild environment file is located at
'/mnt/sda8/x32.var.tmp/portage/x11-drivers/nvidia-drivers-260.19.29/temp/environment'.
Comment 3 Max S. Makarov 2011-04-18 04:15:42 UTC
localhost ~ # emerge -pqv =x11-drivers/nvidia-drivers-260.19.29
[ebuild   R   ] x11-drivers/nvidia-drivers-260.19.29  USE="gtk -acpi -custom-cflags (-multilib)"
localhost ~ # emerge --info =x11-drivers/nvidia-drivers-260.19.29
Portage 2.1.9.42 (default/linux/x86/10.0, gcc-4.4.5, glibc-2.11.3-r0, 2.6.36-gentoo-r8 i686)
=================================================================
                        System Settings
=================================================================
System uname: Linux-2.6.36-gentoo-r8-i686-AMD_Athlon-tm-_64_X2_Dual_Core_Processor_4400+-with-gentoo-1.12.14
Timestamp of tree: Sat, 16 Apr 2011 16:30:01 +0000
ccache version 2.4 [enabled]
app-shells/bash:     4.1_p9
dev-java/java-config: 2.1.11-r3
dev-lang/python:     2.6.6-r2, 3.1.3-r1
dev-util/ccache:     2.4-r9
dev-util/cmake:      2.8.1-r2
sys-apps/baselayout: 1.12.14-r1
sys-apps/sandbox:    2.4
sys-devel/autoconf:  2.13, 2.65-r1
sys-devel/automake:  1.7.9-r1, 1.8.5-r3, 1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:  2.20.1-r1
sys-devel/gcc:       4.3.4, 4.4.5
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.10
sys-devel/make:      3.81-r2
sys-kernel/linux-headers: 2.6.36.1
virtual/os-headers:  2.6.36.1 (sys-kernel/linux-headers)
ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="* -@EULA"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=k8 -pipe"                                                                                                                                     
CHOST="i686-pc-linux-gnu"                                                                                                                                        
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0 /var/bind /var/lib/hsqldb /var/qmail/alias /var/qmail/control"                                                                                                                                                         
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5.2/ext-active/ /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.2/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.2/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"             
CXXFLAGS="-O2 -march=k8 -pipe"                                                                                                                                   
DISTDIR="/usr/portage/distfiles"                                                                                                                                 
FEATURES="assume-digests binpkg-logs ccache collision-protect distlocks fixlafiles fixpackages metadata-transfer news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"                                                                                           
FFLAGS=""                                                                                                                                                        
GENTOO_MIRRORS="http://distfiles.gentoo.org"                                                                                                                     
LANG="ru_RU.UTF-8"                                                                                                                                               
LC_ALL=""                                                                                                                                                        
LDFLAGS="-Wl,-O1 -Wl,--as-needed"                                                                                                                                
LINGUAS="ru en"                                                                                                                                                  
MAKEOPTS="-j3"                                                                                                                                                   
PKGDIR="/usr/portage/packages"                                                                                                                                   
PORTAGE_CONFIGROOT="/"                                                                                                                                           
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"                                                                                                                                    
PORTAGE_TMPDIR="/var/tmp"                                                                                                                                        
PORTDIR="/usr/portage"                                                                                                                                           
PORTDIR_OVERLAY="/var/lib/layman/ltsp /var/lib/layman/sunrise /usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="3dnow 3dnowext 3gpp X acl alsa bash-completion berkdb bzip2 cdr cli consolekit cracklib crypt cups cxx dbus doc dri dvd dvdr emovix encode fame ffmpeg flac fortran gdbm gif gnome gnome-keyring gpm gstreamer gtk gtk2 iconv id3tag ithreads java jpeg jpeg2k kde lame lcms libnotify mmx modules mp3 mpeg mudflap ncurses nls nptl nptlonly ogg opengl openmp oss pam pcre perl png pppd profile python qt3support qt4 quicktime readline sdl session slang sound spell sql sqlite sse sse2 sse3 ssh ssl ssse3 startup-notification svg sysfs taglib tcpd theora threads tiff tk truetype udev unicode usb v4l v4l2 vcd vorbis webkit win32codecs x86 xcomposite xml xorg xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" APACHE2_MPMS="worker" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="ru en" NETBEANS_MODULES="php profiler webcommon ide java websvccommon nb harness cnd dlight" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia nv nouveau vesa fbdev v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

=================================================================
                        Package Settings
=================================================================

x11-drivers/nvidia-drivers-260.19.29 was built with the following:
USE="gtk -acpi -custom-cflags (-multilib)"
Comment 4 Max S. Makarov 2011-04-18 04:18:17 UTC
Created attachment 270331 [details]
complete build.log
Comment 5 Max S. Makarov 2011-04-18 04:19:05 UTC
Created attachment 270333 [details]
environment
Comment 6 SpanKY gentoo-dev 2011-04-18 06:16:16 UTC
since no one else is complaining, chances are your system is broken in some way

please run:
emerge --debug nvidia-drivers >& log

and post the log as an attachment
Comment 7 Max S. Makarov 2011-04-18 06:54:39 UTC
Created attachment 270339 [details]
emerge debug nvidia-drivers
Comment 8 SpanKY gentoo-dev 2011-04-18 15:05:48 UTC
your sys-apps/file is broken:
file: could not find any magic files!

re-emerge it and/or strace it to find out why it cant find its files
Comment 9 Max S. Makarov 2011-04-19 11:03:20 UTC
re-emerge wasn't solved a problem. How can I connect `strace` to `file` when emerge is running. Sorry I have not even a little experience with debuging.
Comment 10 Jeroen Roovers (RETIRED) gentoo-dev 2011-04-19 16:27:57 UTC
(In reply to comment #9)
> re-emerge wasn't solved a problem. How can I connect `strace` to `file` when
> emerge is running. Sorry I have not even a little experience with debuging.

emerge strace
strace -f -o file.strace file 

Then attach <file.strace>.
Comment 11 Max S. Makarov 2011-04-20 11:30:14 UTC
Created attachment 270635 [details]
file.strace

I have seen a problem. But I don't know how to exclude `/usr/local/zend/lib` from system libs. I don't want to delete it.
Comment 12 Max S. Makarov 2011-04-20 11:43:35 UTC
localhost ~ # cd /etc/ld.so.conf.d/
localhost ld.so.conf.d # mv zend_server.conf zend_server.conf.bak
localhost ld.so.conf.d # env-update
>>> Regenerating /etc/ld.so.cache...


It fixed. Thanks all for help. Gentoo community the best! :)