There are some bug threads that suggested USE='regex deprecated', however, its not going. Any clues are welcome. <unnamed port>: In expression (quote shift): <unnamed port>: Stack overflow Some deprecated features have been used. Set the environment variable GUILE_WARN_DEPRECATED to "detailed" and rerun the program to get more information. Set it to "no" to suppress this message. make[1]: ** [guile-library.texi] Erro 1 make[1]: Saindo do diretório `/var/tmp/portage/dev-scheme/guile-lib-0.1.6/work/guile-lib-0.1.6/doc' make: ** [all-recursive] Erro 1 emake failed * ERROR: dev-scheme/guile-lib-0.1.6 failed (compile phase): * emake failed * * Call stack: * ebuild.sh, line 56: Called src_compile * environment, line 2180: Called _eapi2_src_compile * ebuild.sh, line 665: Called die * The specific snippet of code: * emake || die "emake failed" * * If you need support, post the output of 'emerge --info =dev-scheme/guile-lib-0.1.6', * the complete build log and the output of 'emerge -pqv =dev-scheme/guile-lib-0.1.6'. * The complete build log is located at '/var/tmp/portage/dev-scheme/guile-lib-0.1.6/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-scheme/guile-lib-0.1.6/temp/environment'. * S: '/var/tmp/portage/dev-scheme/guile-lib-0.1.6/work/guile-lib-0.1.6' Reproducible: Always mephisto ~ # emerge --info Portage 2.1.9.42 (default/linux/amd64/10.0/desktop/kde, gcc-4.4.5, glibc-2.11.3-r0, 2.6.36-gentoo-r8 x86_64) ================================================================= System uname: Linux-2.6.36-gentoo-r8-x86_64-Intel-R-_Core-TM-_i7_CPU_930_@_2.80GHz-with-gentoo-1.12.14 Timestamp of tree: Tue, 05 Apr 2011 15:15:01 +0000 app-shells/bash: 4.1_p9 dev-java/java-config: 2.1.11-r3 dev-lang/python: 2.5.4-r4, 2.7.1-r1, 3.1.3-r1 dev-util/cmake: 2.8.4 sys-apps/baselayout: 1.12.14-r1 sys-apps/sandbox: 2.4 sys-devel/autoconf: 2.65-r1 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.1 sys-devel/binutils: 2.20.1-r1 sys-devel/gcc: 4.4.5 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.10 sys-devel/make: 3.81-r2 virtual/os-headers: 2.6.36.1 (sys-kernel/linux-headers) ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests binpkg-logs collision-protect distlocks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FFLAGS="" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="pt_BR.UTF-8" LDFLAGS="-Wl,--as-needed" LINGUAS="pt_BR en" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" SYNC="rsync://rsync.br.gentoo.org/gentoo-portage" USE="X a52 aac acl acpi additions alsa amd64 bash-completion berkdb bluetooth branding bzip2 cairo cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr dvdread emacs embedded emboss encode exif extensions extras fam ffmpeg fftw firefox flac fortran ftp gcj gdbm gdu ggc gif gimp gpm gtk gzip iconv icu imagemagick ipv6 java jpeg kde kpathsea latex lcms ldap libnotify mad midi mikmod mmx mng modules motif mp3 mp4 mpeg mudflap multilib ncurses nls nptl nptlonly nsplugin nss nvidia ogg opengl openmp pam pango pcre pdf perl png policykit ppds pppd python qt3support qt4 readline reiserfs samba sdl semantic-desktop session spell sse sse2 ssl startup-notification svg sysfs tar tcpd tetex threads tiff tk truetype type1 udev unicode usb vorbis x264 xcb xft xinerama xml xorg xulrunner xv xvid zip zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="pt_BR en" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, MAKEOPTS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY
Please attach the entire build log.
Also, please run `LC_ALL=C emerge guile-lib' and attach that build log, so that we get English error messages.
mephisto ~ # more /var/tmp/portage/dev-scheme/guile-lib-0.1.6/temp/build.log * Package: dev-scheme/guile-lib-0.1.6 * Repository: gentoo * Maintainer: hkBst@gentoo.org scheme@gentoo.org * USE: amd64 consolekit elibc_glibc kernel_linux multilib policykit userland_GNU * FEATURES: sandbox >>> Unpacking source... >>> Unpacking guile-lib-0.1.6.tar.gz to /var/tmp/portage/dev-scheme/guile-lib-0.1.6/work >>> Source unpacked in /var/tmp/portage/dev-scheme/guile-lib-0.1.6/work >>> Preparing source in /var/tmp/portage/dev-scheme/guile-lib-0.1.6/work/guile-lib-0.1.6 ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/dev-scheme/guile-lib-0.1.6/work/guile-lib-0.1.6 ... ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysc onfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for guile... /usr/bin/guile checking for guile-config... /usr/bin/guile-config checking for guile-tools... /usr/bin/guile-tools checking libguile compile flags... -pthread checking libguile link flags... -pthread -lguile -lltdl -L/usr/lib64 -Wl,--as-needed -lgmp -lcrypt -lm -lltdl checking if (srfi srfi-34) is available... yes checking if (srfi srfi-35) is available... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating examples/Makefile config.status: creating unit-tests/Makefile >>> Source configured. >>> Compiling source in /var/tmp/portage/dev-scheme/guile-lib-0.1.6/work/guile-lib-0.1.6 ... make Making all in src make[1]: Entering directory `/var/tmp/portage/dev-scheme/guile-lib-0.1.6/work/guile-lib-0.1.6/src' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/var/tmp/portage/dev-scheme/guile-lib-0.1.6/work/guile-lib-0.1.6/src' Making all in doc make[1]: Entering directory `/var/tmp/portage/dev-scheme/guile-lib-0.1.6/work/guile-lib-0.1.6/doc' guile --debug --use-srfi=13 -l ./guile-library.scm \ -c '(for-each (lambda (m) (format #t "~a.scm\n" (string-join (map symbol->string m) "/"))) (map car *modules*))' \ > guile-libraryscmfiles ../dev-environ ./make-texinfo.scm ./guile-library.scm >guile-library.texi Backtrace: In unknown file: ?: 356* [map #<procedure #f #> #] ?: 357* [#<procedure #f (syntmp-e-698)> syntmp-default-569] ?: 358* [syntmp-chi-151 syntmp-default-569 (# # # # ...) (# # # # ...)] ?: 359 [call-with-values #<procedure #f ()> #<procedure #f #>] ?: 360 (@call-with-values (producer consumer)) ?: 361* [#<procedure #f ()>] ?: 362* [syntmp-syntax-type-149 syntmp-default-569 (# # # ...) ...] ?: 363 (cond (# #) (# #) (# #) ...) ?: 364 (let* ((syntmp-n-791 #)) (let* (#) (let* # #))) ?: 365* [syntmp-id-var-name-137 syntmp-default-569 (# # # # ...)] ?: 366 (letrec (# # #) (cond # # # ...)) ... ?: 367 (or (call-with-values # #) syntmp-id-889) ?: 368* [call-with-values #<procedure #f ()> #<procedure #f #>] ?: 369 (@call-with-values (producer consumer)) ?: 370* [#<procedure #f ()>] ?: 371* [syntmp-search-891 syntmp-default-569 (# # # # ...) (top)] ?: 372 (if (null? syntmp-subst-921) (values #f syntmp-marks-922) ...) ... ?: 373 (if (eq? syntmp-fst-923 #) (syntmp-search-891 syntmp-sym-920 # ...) ...) ?: 374* [eq? #(ribcage () () ()) ... ?: 375* (quote shift) <unnamed port>: In expression (quote shift): <unnamed port>: Stack overflow Some deprecated features have been used. Set the environment variable GUILE_WARN_DEPRECATED to "detailed" and rerun the program to get more information. Set it to "no" to suppress this message. make[1]: *** [guile-library.texi] Error 1 make[1]: Leaving directory `/var/tmp/portage/dev-scheme/guile-lib-0.1.6/work/guile-lib-0.1.6/doc' make: *** [all-recursive] Error 1 emake failed * ERROR: dev-scheme/guile-lib-0.1.6 failed (compile phase): * emake failed * * Call stack: * ebuild.sh, line 56: Called src_compile * environment, line 2181: Called _eapi2_src_compile * ebuild.sh, line 665: Called die * The specific snippet of code: * emake || die "emake failed" * * If you need support, post the output of 'emerge --info =dev-scheme/guile-lib-0.1.6', * the complete build log and the output of 'emerge -pqv =dev-scheme/guile-lib-0.1.6'. * The complete build log is located at '/var/tmp/portage/dev-scheme/guile-lib-0.1.6/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-scheme/guile-lib-0.1.6/temp/environment'. * S: '/var/tmp/portage/dev-scheme/guile-lib-0.1.6/work/guile-lib-0.1.6'
Wghich guile version are you using?
Why don't you have any optimization flags in your *FLAGS? Try add -O2 and reemerge things.
(In reply to comment #4) > Wghich guile version are you using? I have tried all of them with no success, including that one masked. guile-lib 0.1.3 0.1.6 (~)0.1.9
(In reply to comment #5) > Why don't you have any optimization flags in your *FLAGS? Try add -O2 and > reemerge things. I have emerged guile-lib with the -O2 option just now, but the error remains the same.
(In reply to comment #5) > Why don't you have any optimization flags in your *FLAGS? Try add -O2 and > reemerge things. Answering your question it self. I usually don't use optimization flags and didn't have any problems setting no optimization at all. Have you had problems like this before? Also, I want to keep my Gentoo installation as much portable as possible. One thing more, do you happen to know if the gentoo-science herd is alive?
a) which guile not guile-lib version are you using? b) Not setting -O2 for the complete system is making things slow, if not unstable. The default CFLAGS from the profiles are "-O2 -pipe". This is what we suggest at least. This could be the reason why it fails. Try rebuilding the whole system with -O2 enabled. c) Setting -march=native makes it completly unportable to other system, different from the architecture you are on. d) we are alive!!
(In reply to comment #9) > a) > which guile not guile-lib version are you using? guile-1.8.5-r1 > > b) > Not setting -O2 for the complete system is making things slow, if not unstable. > The default CFLAGS from the profiles are "-O2 -pipe". This is what we suggest > at least. This could be the reason why it fails. Try rebuilding the whole > system with -O2 enabled. I've got the CFLAGS from http://en.gentoo-wiki.com/wiki/Safe_Cflags They say that "native" is safer and will automatically detects the features of my CPU supports and sets the options appropriately. Not sure which CFLAG I should use instead. For i7 processor they recommend the following: CHOST="x86_64-pc-linux-gnu" CFLAGS="-march=core2 -mtune=generic -O2 -pipe" CXXFLAGS="${CFLAGS}" Is it safe?? > > c) > Setting -march=native makes it completly unportable to other system, different > from the architecture you are on. I agree. > > d) > we are alive!! That's really great! I couldn't find any help until now. I have post several issues about ccp4 and coot installation on the gentoo-forums, but didn't get any help.
(In reply to comment #10) > (In reply to comment #9) > > a) Could you try higher versions? > > b) Your CFLAGS just show "-march=native", try CFLAGS="-march=native -O2 -pipe" > > d) > > we are alive!! Forums are not my place to be. Try our mailing lists. They are normally better. http://www.gentoo.org/main/en/lists.xml
(In reply to comment #11) > (In reply to comment #10) > > (In reply to comment #9) > > > a) Coot is working! Guile-lib was successfully emerged with guile-1.8.7-r2. The guile-lib was also emerged with my old CFLAG, so as we can conclude that the problem was the guile version. Thank you so much.
We need to fix this down in the ebuild. Thanks for testing.
