Bug 360737 – sci-chemistry/openbabel-python-2.3.0 rejecting dev-lang/swig-2.0.2

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description David Kredba 2011-03-27 09:03:38 UTC]

Sci-chemistry/openbabel-python-2.3.0 rejects dev-lang/swig-2.0.2 installed:

!!! One or more updates have been skipped due to a dependency conflict:

dev-lang/swig:0

  (dev-lang/swig-2.0.2, ebuild scheduled for merge) conflicts with
    =dev-lang/swig-2.0.1 required by (sci-chemistry/openbabel-python-2.3.0, ebuild scheduled for merge)

Reproducible: Always

Steps to Reproduce:
1.Have dev-lang/swig-2.0.2
2.Try to upgrade to or install =sci-chemistry/openbabel-python-2.3.0
3.
Actual Results:  
=dev-lang/swig-2.0.2 rejected by =sci-chemistry/openbabel-python-2.3.0

Expected Results:  
=dev-lang/swig-2.0.2 accepted by =sci-chemistry/openbabel-python-2.3.0

emerge --info
Portage 2.1.9.44 (default/linux/amd64/10.0/desktop/kde, gcc-4.5.2, glibc-2.13-r2, 2.6.38-gentoo-1d x86_64)
=================================================================
System uname: Linux-2.6.38-gentoo-1d-x86_64-Intel-R-_Core-TM-2_Quad_CPU_Q9550_@_2.83GHz-with-gentoo-2.0.2
Timestamp of tree: Sun, 27 Mar 2011 08:30:01 +0000
app-shells/bash:     4.2_p8
dev-java/java-config: 2.1.11-r3
dev-lang/python:     2.7.1-r1, 3.1.3-r1
dev-util/cmake:      2.8.4
sys-apps/baselayout: 2.0.2
sys-apps/openrc:     0.8.0
sys-apps/sandbox:    2.5
sys-devel/autoconf:  2.13, 2.68
sys-devel/automake:  1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:  2.21
sys-devel/gcc:       4.5.2
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.4-r1
sys-devel/make:      3.82
virtual/os-headers:  2.6.38 (sys-kernel/linux-headers)
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -ggdb -march=core2"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/themes/oxygen-gtk/gtk-2.0 /var/bind /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -ggdb -march=core2"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-O2 -pipe -ggdb -march=core2"
GENTOO_MIRRORS="ftp://gentoo.mirror.web4u.cz/"
LANG="cs_CZ.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="cs en"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_COMPRESS="echo"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo caps cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr emboss encode exif fam firefox flac fortran gdbm gdu gif gmp gpm gtk iconv idn ithreads java jpeg jpeg2k kde lcms ldap libnotify lzma mad mikmod mmx mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl nptlonly objc objc++ objc-gc odbc ogg openexr opengl openmp pam pango pcre pdf perl png policykit ppds pppd python qt3support qt4 readline samba sdl session slang speex spell sqlite sse sse2 ssl ssse3 svg sysfs tcl tcpd threads tiff tk truetype udev unicode usb vorbis wavpack x264 xattr xcb xinerama xml xorg xulrunner xv xvid xvmc zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev keyboard mouse joystick" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="cs en" LIRC_DEVICES="inputlirc pctv hauppauge hauppauge_dvb devinput" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia nv vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 1 Justin Lecher (RETIRED) 2011-03-27 12:00:36 UTC]

dev-lang/swig is a build dep and openbabel requires version 2.0.1 exactly. Just emerge the lower version.

In case you have another app, depending during runtime on swig, please reopen bug.

[Comment 2 David Kredba 2011-03-27 12:24:51 UTC]

So SLOT it please because on ~amd64 is latest version 2.0.2.

[Comment 3 Justin Lecher (RETIRED) 2011-03-27 12:53:42 UTC]

why slotting? You need it at build time. so install it then and remove it afterwards. It is not needed anymore.