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Bug 348151 - sci-visualization/paraview-3.6.2 fails to configure with python-2.7.1
Summary: sci-visualization/paraview-3.6.2 fails to configure with python-2.7.1
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: High normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
: 349981 368449 (view as bug list)
Depends on:
Blocks:
 
Reported: 2010-12-08 15:33 UTC by Juergen Rose
Modified: 2011-07-27 17:39 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
The requested build log (build.log,21.01 KB, text/plain)
2010-12-17 07:28 UTC, Denis Demidov
Details

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Description Juergen Rose 2010-12-08 15:33:11 UTC
'emerge paraview' fails with:
...
-- Looking for glXGetProcAddressARB in GL/glx.h - TRUE
CMake Error at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:70 (MESSAGE):
  Could NOT find PythonLibs (missing: PYTHON_LIBRARIES PYTHON_INCLUDE_PATH)
Call Stack (most recent call first):
  VTK/CMake/FindPythonLibs.cmake:70 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  CMake/ParaViewCommon.cmake:391 (FIND_PACKAGE)
  CMakeLists.txt:250 (INCLUDE)


CMake Error: The following variables are used in this project, but they are set to NOTFOUND.
Please set them or make sure they are set and tested correctly in the CMake files:
PYTHON_INCLUDE_PATH (ADVANCED)
   used as include directory in directory /var/tmp/portage/sci-visualization/paraview-3.6.2/work/ParaView3/VTK
...
-- Configuring incomplete, errors occurred!
 * ERROR: sci-visualization/paraview-3.6.2 failed:


Reproducible: Always




root@lynx:/usr/local/portage/sci-visualization(11)# emerge --info =sci-visualization/paraview-3.6.2
Portage 2.1.9.25 (default/linux/amd64/10.0/desktop, gcc-4.5.1, glibc-2.12.1-r3, 2.6.36-gentoo-r3 x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-2.6.36-gentoo-r3-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T8300_@_2.40GHz-with-gentoo-2.0.1
Timestamp of tree: Wed, 08 Dec 2010 13:00:01 +0000
app-shells/bash:     4.1_p9
dev-java/java-config: 2.1.11-r2
dev-lang/python:     2.7.1, 3.1.3
dev-util/cmake:      2.8.1-r2
sys-apps/baselayout: 2.0.1-r1
sys-apps/openrc:     0.6.8
sys-apps/sandbox:    2.4
sys-devel/autoconf:  2.13, 2.68
sys-devel/automake:  1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:  2.20.1-r1
sys-devel/gcc:       4.4.5, 4.5.1-r1
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.4-r1
sys-devel/make:      3.82
virtual/os-headers:  2.6.36.1 (sys-kernel/linux-headers)
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1 skype-eula googleearth AdobeFlash-10.1 cadsoft"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=nocona -O2 -pipe -fomit-frame-pointer"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=nocona -O2 -pipe -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-march=nocona -O2 -pipe -fomit-frame-pointer"
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo ftp://ftp.easynet.nl/mirror/gentoo/ "
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="de fr"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/lordvan /var/lib/layman/x11 /var/lib/layman/java-overlay /var/lib/layman/sunrise /var/lib/layman/arcon /var/lib/layman/science /var/lib/layman/pro-audio /var/lib/layman/qting-edge /var/lib/layman/n4g /var/lib/layman/ibormuth /usr/local/portage /var/lib/cpan /var/lib/g-octave"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="64bit R X Xaw3d a52 aac abiword acl acpi admin afs alsa amd64 ao apache2 applet archive arpack asf aspell assistant audacious audiofile automap automount bash-completion beagle berkdb blas blast bluetooth boo boost branding bzip2 cairo cardbus cdda cddb cdf cdio cdparanoia cdr cg cgi chm cli consolekit corba cracklib crypt css cuda cups curl cxx daap db dbase dbi dbm dbus designer devhelp device-mapper dga dia djvu doc dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds elf emacs emboss emf empathy encode epiphany evo examples exif expat extensions extra extras fam fame ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fpx fts3 fuse galago garmin gd gdal gdbm gedit geoip geolocation geos gif gimp ginac git glade glib gml gmp gmtsuppl gnokii gnome gnome-keyring gnome-print gnuplot gnutls gphoto2 gpm grammar graphics graphtft graphviz grass gs gsl gsm gstreamer gtk guile hal harness hddtemp hdf hdf5 hdri hlapi http httpd hvm iconv icq icu id3 ide imagemagick imap innodb inotify ipod ipv6 irda ithreads jabber jadetex java java5 java6 jbig john jpeg jpeg2k kdrive kerberos kpathsea kqemu kvm ladspa lame lapack laptop latex latex3 lcms ldap lensfun libffi libgda libnotify libsamplerate lirc lua lzo mad mail maildir mailwrapper mapnik math matroska mikmod mkl mmx mmxext mng modules mono moonlight motif mozdevelop mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap multilib musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numarray numeric nvidia obex objc ocaml octave odbc ogdi ogg ole openexr opengl openmp overview pae pam pango pcre pda pdf perl plotutils plugins png podcast policykit posix postgres postscript ppds pppd preview-latex proj projectx pstricks pulseaudio pymol python python-bindings q16 q32 qemu qhull qt3support qt4 quicktime readline reiserfs reports rle romio rpc rrdcgi rrdtool samba sasl science sdl secure-delete semantic-desktop server session sip slang slp smbclient smp sms sndfile snmp soup sox speex spell sql sqlite sse sse2 ssl startup-notification stlport subtitles subversion suexec svg swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs theora thinkpad threads thunderbird tidy tiff tk tntc tools truetype udev unicode usb userlocales utempter v4l2 video virtualbox vorbis wav webdav webdav-serf webkit wifi wmf wxwidgets x264 xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" CAMERAS="canon" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" DVB_CARDS="usb-wt220u" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" PHP_TARGETS="php5-2" QEMU_SOFTMMU_TARGETS="i386 ppc ppc64 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18 jruby" USERLAND="GNU" VIDEO_CARDS="nv nvidia nouveau vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

=================================================================
                        Package Settings
=================================================================

sci-visualization/paraview-3.6.2 was built with the following:
USE="boost cg doc examples gui mpi (multilib) mysql odbc overview plugins postgres python -streaming"
CFLAGS="-march=nocona -O2 -pipe -fomit-frame-pointer -DH5_USE_16_API"
CXXFLAGS="-march=nocona -O2 -pipe -fomit-frame-pointer -DH5_USE_16_API"
LDFLAGS="-Wl,-O1"



root@lynx:/usr/local/portage/sci-visualization(13)# emerge -pqv =sci-visualization/paraview-3.6.2
[ebuild   R   ] sci-visualization/paraview-3.6.2  USE="boost cg doc examples gui mpi mysql odbc overview plugins postgres python -streaming"
Comment 1 Jeroen Roovers (RETIRED) gentoo-dev 2010-12-09 18:10:30 UTC
Please post the output of `eselect python list' in a comment and attach the entire build log as a file.
Comment 2 Denis Demidov 2010-12-13 09:23:58 UTC
I have the same problem with paraview-3.8.1 from science overlay.
I managed to compile it by switching python use flag off. But I would like to keep python support.

eselect python list:
Available Python interpreters:
  [1]   python2.7 *
  [2]   python3.1
Comment 3 Jeroen Roovers (RETIRED) gentoo-dev 2010-12-14 16:21:49 UTC
(In reply to comment #1)
> [...] and attach the entire build log as a file.
Comment 4 Jeroen Roovers (RETIRED) gentoo-dev 2010-12-16 16:13:23 UTC
Please reopen this bug report when you have provided the requested information.
Comment 5 Denis Demidov 2010-12-17 07:28:52 UTC
Created attachment 257393 [details]
The requested build log

Here is my emerge --info:

Portage 2.1.9.25 (default/linux/amd64/10.0, gcc-4.5.1, glibc-2.12.1-r3, 2.6.36-gentoo-r4 x86_64)
=================================================================
System uname: Linux-2.6.36-gentoo-r4-x86_64-Intel-R-_Core-TM-_i7_CPU_920_@_2.67GHz-with-gentoo-2.0.1
Timestamp of tree: Fri, 10 Dec 2010 01:45:02 +0000
app-shells/bash:     4.1_p9
dev-java/java-config: 2.1.11-r2
dev-lang/python:     2.7.1, 3.1.3
dev-util/cmake:      2.8.1-r2
sys-apps/baselayout: 2.0.1-r1
sys-apps/openrc:     0.6.8
sys-apps/sandbox:    2.4
sys-devel/autoconf:  2.13, 2.68
sys-devel/automake:  1.10.3, 1.11.1
sys-devel/binutils:  2.21
sys-devel/gcc:       4.5.1-r1
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.4-r1
sys-devel/make:      3.82
virtual/os-headers:  2.6.36.1 (sys-kernel/linux-headers)
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA dlj-1.1 skype-eula AdobeFlash-10.1"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=core2"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/openvpn/easy-rsa /var/lib/redmine/config"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -march=core2"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en ru"
MAKEOPTS="-j9"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage/myebuilds"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X acl acpi alsa amd64 bash-completion berkdb bzip2 cli consolekit cracklib crypt cups cxx dbus dri fortran gdbm gnome gnome-keyring gpm gtk iconv jpeg libnotify logrotate mmx modules mudflap multilib ncurses nls nptl nptlonly nptls offensive opencl openmp pam pcre perl png policykit pppd pulseaudio python qt3support readline session sse sse2 sses ssl sysfs tcpd threads tiff truetype unicode vim-syntax xinetd xorg xulrunner zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en ru" PHP_TARGETS="php5-2" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 6 Yang Zhang 2011-04-24 08:53:02 UTC
The same problem occurs in recent stable python upgrade.
Comment 7 François Bissey 2011-04-26 04:22:45 UTC
I have this fixed in paraview 3.8.1 in the science overlay. It should really be moved to the tree. At least someone should port the fix to the main tree, the sed command in src_prepare should trivially apply:
cd VTK

# Patch FindPythonLibs.cmake for python-2.7, removing it does more harm than good.
sed -e "s:2.6 2.5 2.4 2.3 2.2 2.1 2.0:2.7 2.6 2.5 2.4 2.3 2.2 2.1 2.0:" \
	-i CMake/FindPythonLibs.cmake || die "failed to patch for python 2.7"
Comment 8 Justin Lecher (RETIRED) gentoo-dev 2011-06-20 06:06:45 UTC
*** Bug 368449 has been marked as a duplicate of this bug. ***
Comment 9 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev 2011-07-27 17:39:15 UTC
*** Bug 349981 has been marked as a duplicate of this bug. ***