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Bug 338359 - depclean complains about missing package that emerge -uDN does not install
Summary: depclean complains about missing package that emerge -uDN does not install
Status: RESOLVED FIXED
Alias: None
Product: Portage Development
Classification: Unclassified
Component: Core (show other bugs)
Hardware: All Linux
: High normal (vote)
Assignee: Portage team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2010-09-22 13:43 UTC by R. David Murray
Modified: 2014-08-01 19:54 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


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Description R. David Murray 2010-09-22 13:43:02 UTC
Somehow my system has gotten into a state where running --depclean complains that dev-lang/perl-5.12.1 is not installed, pulled in by virtual/perl-File-Spec-3.31.  I ran emerge -uDN per the instructions, but it did not install any packages.  equery depends didn't show anything depending on it, so I tried unmerging perl-File-Spec, but that results in depclean complaining that it isn't installed, and is required by Archive-Zip-1.30.  equery depends says that is required by openoffice.  emerge -uDN still does not show anything needing installation.

Reproducible: Always
Comment 1 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2010-09-22 18:10:15 UTC
Please paste your 'emerge --info', and attach 'emerge --depclean' and 'emerge -pvDtuN @world' output if possible.
Comment 2 R. David Murray 2010-10-13 01:30:17 UTC
Just did another emerge --sync/update world cycle, and the --depclean problem is still with me.  It turned out to be surprisingly difficult to capture the output of emerge without getting a lot of control codes.  Script of course got them all, so I tried with --color=n which was better but still messy.  Then I tried redirecting the output to a file, but despite doing 2>&1 on the emerge --depclean the error message of interest was printed on the terminal, not written to the file.  So I had to cut and paste that bit.  And emerge *still* wrote some control codes to the file :(

Anyway, here's the log:


emerge --info
Portage 2.2_rc94 (default/linux/x86/10.0, gcc-4.4.4, glibc-2.12.1-r1, 2.6.33-gentoo i686)
=================================================================
System uname: Linux-2.6.33-gentoo-i686-Intel-R-_Core-TM-2_CPU_6600_@_2.40GHz-with-gentoo-2.0.1
Timestamp of tree: Tue, 12 Oct 2010 17:30:20 +0000
app-shells/bash:     4.1_p9
dev-java/java-config: 2.1.11
dev-lang/python:     2.4.6, 2.5.4-r4, 2.6.6, 2.7, 3.1.2-r4
dev-util/cmake:      2.8.1-r2
sys-apps/baselayout: 2.0.1
sys-apps/openrc:     0.6.3
sys-apps/sandbox:    2.3-r1
sys-devel/autoconf:  2.13, 2.68
sys-devel/automake:  1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:  2.20.1-r1
sys-devel/gcc:       3.3.6-r1, 4.4.4-r2
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.10
sys-devel/make:      3.81-r2
virtual/os-headers:  2.6.35 (sys-kernel/linux-headers)
Repositories: gentoo local
ACCEPT_KEYWORDS="x86 ~x86"
ACCEPT_LICENSE="* -@EULA"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=pentium-m -msse3 -fomit-frame-pointer -pipe -mno-tls-direct-seg-refs"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xkb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -march=pentium-m -msse3 -fomit-frame-pointer -pipe -mno-tls-direct-seg-refs"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs buildpkg distlocks fixlafiles fixpackages news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://portage.bitdance.com/gentoo-portage"
USE="X aac alsa amr bitmap-fonts cdparanoia cli cracklib dga directfb divx dri dvd encode fbcon flac gif gmedia iconv idn jpeg logrotate mmx mp3 mpeg ncurses nptl nptlonly nsplugin ogg opengl pdf png python quicktime readline realmedia sdl spell sse ssl theora tiff truetype truetype-fonts typel-fonts udev unicode vim-syntax vorbis win32codecs wmp x86 xorg xv zlib zsh-completion" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null pcm plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CAMERAS="canon" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" PHP_TARGETS="php-5.2" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="intel vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

emerge --depclean

 * Always study the list of packages to be cleaned for any obvious
 * mistakes. Packages that are part of the world set will always
 * be kept.  They can be manually added to this set with
 * `emerge --noreplace <atom>`.  Packages that are listed in
 * package.provided (see portage(5)) will be removed by
 * depclean, even if they are part of the world set.
 * 
 * As a safety measure, depclean will not remove any packages
 * unless *all* required dependencies have been resolved.  As a
 * consequence, it is often necessary to run `emerge --update
 * --newuse --deep @world` prior to depclean.

Calculating dependencies  ... done!

 * Dependencies could not be completely resolved due to
 * the following required packages not being installed:
 * 
 *   >=virtual/perl-File-Spec-0.80 pulled in by:
 *     dev-perl/Archive-Zip-1.30
 * 
 * Have you forgotten to run `emerge --update --newuse --deep @world` prior
 * to depclean? It may be necessary to manually uninstall packages that no longer
 * exist in the portage tree since it may not be possible to satisfy their
 * dependencies.  Also, be aware of the --with-bdeps option that is documented
 * in `man emerge`.

emerge -pvDtuN @world

These are the packages that would be merged, in reverse order:

Calculating dependencies  .... done!

Total: 0 packages, Size of downloads: 0 kB
Comment 3 Sebastian Luther (few) 2010-10-14 08:28:56 UTC
Please try:

emerge --update --newuse --deep --with-bdeps=y @world
Comment 4 Ben Kohler gentoo-dev 2014-08-01 19:54:26 UTC
Portage now suggests --with-bdeps=y here which will fix this problem, closing.