sci-chemistry/pymol-1.2.3-r1 fails when I try to run the pymol command. It gives the following error: $ pymol python2.6: can't open file '/__init__.py': [Errno 2] No such file or directory Reproducible: Always Steps to Reproduce: 1. emerge pymol 2. run pymol Actual Results: pymol returns the error message: $ pymol python2.6: can't open file '/__init__.py': [Errno 2] No such file or directory Expected Results: pymol starts like expected, not generating an error of not being able to not find a file needed to start. emerge --info Portage 2.1.8.3 (default/linux/x86/10.0, gcc-4.4.3, glibc-2.11.2-r0, 2.6.35 i686) ================================================================= System uname: Linux-2.6.35-i686-Mobile_AMD_Sempron-tm-_Processor_2800+-with-gentoo-1.12.13 Timestamp of tree: Thu, 16 Sep 2010 20:00:22 +0000 distcc 3.1 i686-pc-linux-gnu [disabled] app-shells/bash: 4.1_p7 dev-java/java-config: 2.1.11 dev-lang/python: 2.6.5-r3, 3.1.2-r4 dev-util/cmake: 2.8.1-r2 sys-apps/baselayout: 1.12.13 sys-apps/sandbox: 1.6-r2 sys-devel/autoconf: 2.13, 2.65-r1 sys-devel/automake: 1.10.3, 1.11.1 sys-devel/binutils: 2.20.1-r1 sys-devel/gcc: 4.4.3-r2 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6b sys-devel/make: 3.81-r2 virtual/os-headers: 2.6.30-r1 ACCEPT_KEYWORDS="x86" ACCEPT_LICENSE="* -@EULA" CBUILD="i686-pc-linux-gnu" CFLAGS="-march=athlon-xp -O2 -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/X11/xkb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=athlon-xp -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests collision-protect distlocks fixpackages news nostrip parallel-fetch protect-owned sandbox sfperms strict test unmerge-logs unmerge-orphans userfetch userpriv" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="nl_NL.UTF-8" LDFLAGS="-Wl,-O1,--as-needed" LINGUAS="nl en uk" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="7zip X acl acpi alsa autoipd avahi bash-completion berkdb bzip2 cairo cli cracklib crypt cxx dbus dri encode fam ffmpeg flac fortran fts3 gdbm gif gmp gnutls gpm gtk hal iconv icu imap ipv6 ithreads java5 jpeg libnotify mikmod mmx modules mp3 mudflap ncurses networking nls nptl nptlonly ogg openexr opengl openmp openssl pam pcre perl pic player png pppd python qt3support rdesktop readline reflection sdl session smime sockets spell sqlite sqlite3 sse sse2 ssl startup-notification svg sysfs tcpd theora threads thunar timidity truetype unicode vnc vorbis x86 xcb xcomposite xft xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="nl en uk" RUBY_TARGETS="jruby ruby18 ruby19" USERLAND="GNU" VIDEO_CARDS="radeonhd radeon" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Either log into a new shell or run source /etc/profile. If it is still not working, please past output of env|grep PYMOL Thanks
