This is somewhat weird situation since I did the same update yesterday on other x86 machine and nothing like that had happend. Main difference is that this affected machine uses hardened profile and grsecurity patches on kernel, has large uptime and old gcc compiler (although I don't see nothing in common with situation that occured). After python-2.6.4-r1 upgrade to python-2.6.5-r2 all /usr/lib/python2.6/lib-dynload directory became empty! This caused almost all gentoo utilities refused to work. Fortunately I was able to switch eselect python to unstable version 3.1 which was enough to do rebuild with -v and FEATURES=keeptmp. Unfortunately, I don't see anything suspicious there except that these files aren't copied at the very last installation stage. Reproducible: Always Steps to Reproduce: Will be hard to reproduce anywhere else Actual Results: content of /usr/lib/python2.6/lib-dynload directory vanished Expected Results: content of /usr/lib/python2.6/lib-dynload directory updated Portage 2.1.8.3 (hardened/linux/x86/10.0, gcc-3.4.6, glibc-2.10.1-r1, 2.6.28-hardened-r9 i686) ================================================================= System uname: Linux-2.6.28-hardened-r9-i686-Intel-R-_Pentium-R-_4_CPU_2.66GHz-with-gentoo-1.12.13 Timestamp of tree: Thu, 24 Jun 2010 07:30:01 +0000 app-shells/bash: 4.0_p37 dev-java/java-config: 1.3.7-r1, 2.1.10 dev-lang/python: 2.6.4-r1, 3.1.2-r3 dev-util/cmake: 2.6.4-r3 sys-apps/baselayout: 1.12.13 sys-apps/sandbox: 1.6-r2 sys-devel/autoconf: 2.13, 2.65 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.3, 1.11.1 sys-devel/binutils: 2.20.1-r1 sys-devel/gcc: 3.3.6-r1, 3.4.6-r2, 4.3.4 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6b virtual/os-headers: 2.6.30-r1 ACCEPT_KEYWORDS="x86" ACCEPT_LICENSE="*" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=pentium4 -fomit-frame-pointer -fstack-protector" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/X11/xkb /var/bind /var/lib/hsqldb /var/spool/torque" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -march=pentium4 -fomit-frame-pointer -fstack-protector" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch" GENTOO_MIRRORS="http://distfiles.gentoo.org" LDFLAGS="-Wl,-O1" LINGUAS="pl" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/btg-portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="16bit-indices 3ds 3m 7zip R X Xaw3d a52 aac aalib acl acpi admin adns adplug agg aio alisp allegro alsa amr amrnb amrwb amuled animgif anthy ao aotuv apache2 apbs applet archive asf aspell assistant athena auctex audacious audiofile autotrace background badval bash-completion bazaar bcmath berkdb bidi bittorrent bl blas blksha1 bluetooth boehm-gc boost branding bs2b bzip2 c3p0 cairo cal3d calendar caps catalogs cblas cdaudio cdda cddb cdf cdio cdparanoia cdr cegui cg cgi cgraph chardet chdir chicken chm clamd clamdtop cleartype cli clipboard clisp common-lisp console consolekit context contrast contrib corba coverage cracklib crypt cscope css ctype ctypes-python cue curl cvs cvsgraph cxx d daap daemon darcs dba dbcp dbus default-font deprecated detex devfs-compat devhelp devil dga dht dirac discard-path discouraged djbfft djvu dlloader double-precision dri dts dv dvd dvdnav dvdread dvi dvi2tty dvipdfm ebook edit eds elisp emacs emf enca encode enscript esd eselect excel exceptions exif expat extensions extra-tools extrafilters extras faac faad fame ffmpeg fftw fidonet filter finger firefox fits fixedtones flac flash floppy fltk fluidsynth fontconfig fontforge fortran fping fpx ftp fts3 gadu games gcrypt gd gdbm gedit geoip geos ggi gif ginac glade glib glitz gloox glut gmath gml gmp gnokii gnome gnome-keyring gnomecd gnomedb gnuplot gnutls gopher gpac gpg gpgme gphoto2 gpm gpu graphics graphviz grp gs gsl gsm gstreamer gtk gtk2 gtkhtml gtkstyle guile gunit gzip-el hal hardcoded-tables hardened hash hdf hdf5 hlapi hog hotpixels http humanities hunspell ical icecast iconv icu id3 id3tag idn ieee1394 image-cache imagemagick imap imlib immqt-bc inherit-graph inifile iodbc ipc iplayer ipv6 irda irmc irrlicht jabber jack jack-tmpfs jadetex jai java java5 java6 javamail javascript jbig jboss jcs jikes jms jmx joystick jpeg jpeg2k json junit jython kate kpathsea ladspa lame lapack largefile lash lasi latex latex3 lcms ldap leim libass libcaca libclamav libdsk libextractor libg++ libgcrypt libgda libnotify libproxy libsamplerate libssh2 libsysfs libvisual libwww libyaml linuxkeys live llvm lm_sensors log4j logrotate lqr lua lvm1 lzma lzo m17n-lib mad matroska mbox mcve md5sum memlimit mercurial metis metric mhash midi mikmod mime ming mjpeg mmap mmx mng mod mode-owner modplug modules mopac7 motif mozsha1 mp2 mp3 mp4 mp4live mpe mpeg mpeg2 mpi mplayer mpm-prefork mpqc mudflap multimedia musepack music musicbrainz mvl mzscheme native-exceptions nautilus ncurses neXt nemesi netcdf netpbm network networking new-clx nextaw nls no-old-linux nogyroscopic noopcode nptl nptlonly nss ntlm numeric numpy nut nuv octave odbc ode odk ofx ogdi ogg ogg123 omega openal opencore-amr opencv openexr opengl optimization oscache osdmenu osgapps oss otr pager pam pango pari parse-clocks password paste64 pasteafter pbs pcapnav pcntl pcre pdf pdo pdo-external pear perl perl-geoipupdate pg-intdatetime phonon php physfs pike player playlist plotutils plugins png pnm portaudio posix postgres postproc pppd preview-latex proj projectm pstricks pth publishers python qdbm qhull qpak qt qt3 qt3support qt4 quicktime rar raw readline recode reflection regex rhino rle romio rpm rrdtool rtc rtsp ruby sasl scanner schroedinger science scim script scrobbler sctp sdk sdl sdl-image secure-delete sendmail sensord serial server session shaders sharedext sharedmem shm shout sid sigsegv simplexml skins slang slp sms sndfile snmp soap sockets sound soundex soup sourceview sox sparse speex spell spl splash sql sqlite3 srt srv sse sse2 ssl stream subject-rewrite subtitles subversion suexec suhosin supernodal svg svm swarmcache swig sysfs syslog sysvipc szip t1lib taglib tcl tcltk tcpd tdb tdbtest telepathy tetex tex4ht tga theora threads thumbnail tidy tiff tilepath timezone timidity tivo tk tokenizer toolame toolbar toolkit-scroll-bars tools track-src-odirect traits tremor truetype tta twolame type3 udev umfpack unicode usb utils uudeview vcd verse vidix vim-pager vim-with-x vlm vmd vorbis wad wav wavpack wddx webdav webdav-neon webinterface win32codecs wma wmf wxwidgets wxwindows x264 x86 xanim xbase xcb xchatdccserver xchattext xerces-c xetex xext xface xforms xforward xft xgetdefault xine xinetd xml xml2 xmlpatterns xmlreader xmlrpc xmlwriter xmp xmpi xorg xosd xpdf-headers xpm xrandr xsl xslt xterm xv xvid xvmc yaz youtube yp yv12 zip zlib zvbi" ALSA_CARDS="sb16" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias asis imagemap proxy proxy_ajp proxy_balancer proxy_connect proxy_ftp proxy_http" APACHE2_MPMS="prefork" CAMERAS="canon spca50x template" ELIBC="glibc" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="pl" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="dummy" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LANG, LC_ALL, MAKEOPTS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Created attachment 236391 [details] build log from temp directory Forgotten to mention that revert to python-2.6.4-r1 was successfull, I could eselect back to python-2.6.
Same problem on my hardened gentoo box. Tried recompiling python:2.6 and python:3.1 several times, ran revdep-rebuild but portage will still keep the lib-dynload almost empty. I'll attach the image/ file-listing and a list of files not found in the system after install finished. # emerge --info Portage 2.1.8.3 (hardened/linux/x86, gcc-4.3.4, glibc-2.11.2-r0, 2.6.28-hardened-r9TCQS i686) ================================================================= System uname: Linux-2.6.28-hardened-r9TCQS-i686-Intel-R-_Xeon-TM-_CPU_1700MHz-with-gentoo-1.12.13 Timestamp of tree: Sun, 18 Jul 2010 09:45:02 +0000 distcc 3.1 i686-pc-linux-gnu [disabled] ccache version 2.4 [disabled] app-shells/bash: 4.0_p37 dev-java/java-config: 2.1.11 dev-lang/python: 2.6.5-r2, 3.1.2-r3 dev-util/ccache: 2.4-r7 dev-util/cmake: 2.6.4-r3 sys-apps/baselayout: 1.12.13 sys-apps/sandbox: 1.6-r2 sys-devel/autoconf: 2.65 sys-devel/automake: 1.10.3, 1.11.1 sys-devel/binutils: 2.20.1-r1 sys-devel/gcc: 4.3.4 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6b virtual/os-headers: 2.6.30-r1 ACCEPT_KEYWORDS="x86" ACCEPT_LICENSE="* -@EULA ut2003 skype-eula dlj-1.1 sun-bcla-java-vm" CBUILD="i686-pc-linux-gnu" CFLAGS="-march=pentium4 -O2 -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /opt/openfire/resources/security/ /var/bind" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=pentium4 -O2 -pipe" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="--alphabetical" FEATURES="assume-digests distlock distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch" GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/ ftp://mirror.netcologne.de/gentoo/ http://mirror.qubenet.net/mirror/gentoo/ http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ http://gentoo.lagis.at/ http://mirror.bytemark.co.uk/gentoo/ http://mirror.netcologne.de/gentoo/ http://mirror.muntinternet.net/pub/gentoo/ http://ftp.heanet.ie/pub/gentoo/ http://mirrors.sec.informatik.tu-darmstadt.de/gentoo/ http://distfiles.gentoo.org http://www.ibiblio.org/pub/Linux/distributions/gentoo" LANG="de_DE@euro" LC_ALL="de_DE@euro" LDFLAGS="-Wl,-O1" LINGUAS="de en" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.de.gentoo.org/gentoo-portage" USE="S3TC X509 a52 aac aalib acl acpi activefilter aim alsa apache2 async atm audiofile auth authdaemond authfile authlib avahi bash-completion bcmath berkdb big-tables bittorrent bonjour branding bzip2 ccache cdb cdda cddb cdinstall cdio cdparanoia cdr cdrom cdsound chroot cjk clamav clamd cli cluster corefonts cracklib crosscompile crypt css csv ctype cups curl curlwrappers cxx d daap daemon dbus dedicated dhcp directfb dlopen domain-aware dri dts dv dvb dvbplayer dvd dvdr dvdread dvi dx dxr3 dxr3-audio-denoise dynagraph eap-tls eds elf emboss encode examples exif extensions extraengine extrafilters extramodules extras fam fame fastcgi fbcon fbdev fbsplash festival ffmpeg finger flac fontconfig fortran fping fpx ftp fuse gadu gcj gd gdbm geldkarte geoip gif gmail gnutls gphoto2 gpm gps graphicsmagick gs gsm gstreamer gtalk gzip h323 hal hardened hash howl howl-compat html http httpd hub iconv icq id3 idea idn ieee1394 ifp imagemagick imap imlib immqt-bc inifile ipalias ipfilter ipod iproute2 ipsec ipv6 irc isdnlog jad java java6 javascript jce john jpeg jpeg2k jpgraph json junit kerberos krb4 lame large-domain largenet largeterminal latin1 ldap ldapsam libcaca libclamav libdsk libg++ libgd libnotify libvisual libwww lids lights lm_sensors login-watch logrotate logwatch lynxkeymap lzo m17n-lib mad mail maildir mdnsresponder-compat meanwhile memcache memlimit messages mgetty mhash mikmod mime mimencode mjpeg mmap mmx mod_irc mod_muc mode-owner modperl modplug mods modules motif mp3 mp4 mpe mpe-sdk mpeg mschap msn mudflap multipath multitarget multiuser musepack music musicbrainz mysql mysqli nagios-dns nagios-game nagios-ntp nagios-ping nagios-ssh nat ncurses net netserver network network-cron nfs nls nptl nptlonly ntfs objc objc++ objc-gc offensive ogg openal openexr opengl openmp oscar oss overlays pam password patented pcre pdf pdo perl php pic plotutils pmount png posix postfix ppds pppd procmail ps python quotas radius rar rdesktop rdp readline realms reflection rpc samba sametime sasl scenarios scp screen sdl sensord server session sftp sharedext simplexml snmp soap spell spl sqlite sqlite3 sse sse2 ssl subtitles subversion svg swat sysfs taglib tcl tcp tcp-zebra tcpd tcpmd5 themes theora threads tiff tk tokenizer tools transcode transparent-proxy truetype udev underscores unicode urandom usb user-homedirs vda vhosts vnc vorbis web webdav webmail win32codecs wma wmf x264 x86 xanim xface xfs xine xinetd xml xpm xvid zeroconf zip zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="evdev keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de en" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="fbdev matrox vesa vga mga" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, FFLAGS, INSTALL_MASK, MAKEOPTS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Created attachment 239239 [details] List of files inside image/
Created attachment 239241 [details] Files from image not present after install
With dev-lang/python-2.6.5-r3 /usr/lib/python2.6/lib-dynload/ will be as empty: # ls /usr/lib/python2.6/lib-dynload/ pdflib_py.a pdflib_py.la pdflib_py.so pdflib_py.so.0 pdflib_py.so.0.0.0
Are all needed files present in "${D}" after running the following command? ebuild "$(portageq envvar PORTDIR)/dev-lang/python/python-2.6.5-r3.ebuild" install
Created attachment 239577 [details] List of files inside image/ after ebuild install I did >>> ebuild "$(portageq envvar PORTDIR)/dev-lang/python/python-2.6.5-r3.ebuild" install cd /var/tmp/portage/ find dev-lang/python-2.6.5-r3/image/ -print0 | xargs -0 vdir -d > python-2.6.5-r3_image.list <<< and attached the output. At first glance the missing files are missing (did grep for dyn).
Hello, Did you tried to remove python 3.1 ? I had some issues like this on my amd64, so after wasting time on this I fixed my gentoo following this procedure : - Download Python 2.6.5 sources from a gentoo mirror - eselect python set 2 (python 3.1) - emerge -C dev-lang/python-3.1 - Compile and install Python manually ( http://wiki.braineed.ath.cx/doku.php?id=python_unmerged ) - emerge =dev-lang/python-2.6.5-r3 (To have a proper python installation) - Check that python 2.6 is selected as main python interpreter with eselect (eselect python list) This works perfectly for my workstation. It seems that gentoo isn't ready for python 3.* as they say.
(In reply to comment #8) It's absurd. Python 3 doesn't affect build system of Python 2.
(In reply to comment #7) Please attach build log of dev-lang/python-2.6.5-r3.
Created attachment 239691 [details] build.log from dev-lang/python-2.6.5-r3/temp Here is the build.log requested. I manually checked for lib-dynload contents and just reran the find command, to see, that the direct ls and the second find invocation both show a populatet directory. I ran the find-command from history to ensure I did not change any parameter. Any explanations for this?
(In reply to comment #11) Are needed files present now in /usr/lib/python2.6/lib-dynload after normal installation?
I'm seeing the same issue with r2 and r3.
Please test newer versions.
