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Bug 318297 - app-text/docbook2X and app-text/docbook-sgml-utils file collision
Summary: app-text/docbook2X and app-text/docbook-sgml-utils file collision
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: High normal (vote)
Assignee: Gentoo SGML project
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2010-05-03 15:43 UTC by Patrick Lauer
Modified: 2012-05-25 03:26 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


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Description Patrick Lauer gentoo-dev 2010-05-03 15:43:12 UTC
Trying to install app-text/docbook-sgml-utils-0.6.14:

 * Detected file collision(s):
 * 
 *      /usr/bin/docbook2man
 *      /usr/bin/docbook2texi
 *      /usr/share/man/man1/docbook2man.1.bz2
 *      /usr/share/man/man1/docbook2texi.1.bz2
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * app-text/docbook2X-0.8.8-r2
 *      /usr/bin/docbook2man
 *      /usr/bin/docbook2texi
 *      /usr/share/man/man1/docbook2man.1.bz2
 *      /usr/share/man/man1/docbook2texi.1.bz2

Portage 2.1.8.3 (default/linux/x86/10.0, gcc-4.4.3, glibc-2.11.1-r0, 2.6.32-gentoo-r6 i686)
=================================================================
System uname: Linux-2.6.32-gentoo-r6-i686-AMD_Phenom-tm-_9950_Quad-Core_Processor-with-gentoo-2.0.1
Timestamp of tree: Unknown
app-shells/bash:     4.1_p5
dev-lang/python:     2.6.5-r2, 3.1.2-r3
sys-apps/baselayout: 2.0.1
sys-apps/openrc:     0.6.1-r1
sys-apps/sandbox:    2.2
sys-devel/autoconf:  2.65
sys-devel/automake:  1.11.1
sys-devel/binutils:  2.20.1
sys-devel/gcc:       4.4.3-r2
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6b
virtual/os-headers:  2.6.33
ACCEPT_KEYWORDS="x86 ~x86"
ACCEPT_LICENSE="* -@EULA PUEL"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=i686 -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=i686 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests buildpkg distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms strict test unmerge-logs unmerge-orphans userfetch"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://localhost/gentoo-portage"
USE="X acl berkdb bzip2 cli cracklib crypt cups cxx dri extras fortran gcj gdbm gnutls gpm iconv ipv6 modules mono mudflap ncurses nls nptl nptlonly objc opengl openmp pam pcre perl pppd python readline reflection secure-delete session spl ssl sysfs tcpd unicode x86 xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga neomagic nv r128 radeon savage sis tdfx trident vesa via vmware voodoo" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY
Comment 1 Christoph Junghans (RETIRED) gentoo-dev 2010-06-06 20:09:07 UTC
The same problem on one machine (but it works fine on two others)

Info of the problem machine:

Portage 2.1.8.3 (hardened/linux/x86/10.0, gcc-4.3.4, glibc-2.10.1-r1, 2.6.32-gentoo-r7 i686)
=================================================================
System uname: Linux-2.6.32-gentoo-r7-i686-Intel-R-_Atom-TM-_CPU_330_@_1.60GHz-with-gentoo-1.12.13
Timestamp of tree: Sun, 06 Jun 2010 19:15:01 +0000
ccache version 2.4 [enabled]
app-shells/bash:     4.0_p37
dev-java/java-config: 2.1.10
dev-lang/python:     2.6.4-r1, 3.1.2-r3
dev-util/ccache:     2.4-r7
dev-util/cmake:      2.6.4-r3
sys-apps/baselayout: 1.12.13
sys-apps/sandbox:    1.6-r2
sys-devel/autoconf:  2.65
sys-devel/automake:  1.11.1
sys-devel/binutils:  2.18-r3
sys-devel/gcc:       4.3.4
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6b
virtual/os-headers:  2.6.30-r1
ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="* -@EULA @EULA"
ACCEPT_PROPERTIES="*"
ALSA_CARDS="hda-intel"
ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol"
APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias"
ARCH="x86"
AUTOCLEAN="yes"
CBUILD="i686-pc-linux-gnu"
CCACHE_DIR="/var/tmp/ccache"
CCACHE_SIZE="40G"
CFLAGS="-march=native -O2 -pipe -fomit-frame-pointer"
CHOST="i686-pc-linux-gnu"
CLEAN_DELAY="5"
COLLISION_IGNORE="/lib/modules"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CVS_RSH="ssh"
CXXFLAGS="-march=native -O2 -pipe -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
ELIBC="glibc"
EMERGE_DEFAULT_OPTS="--verbose --with-bdeps=y --jobs=5 --load-average=5"
EMERGE_WARNING_DELAY="10"
EPREFIX=""
EROOT="/"
FEATURES="assume-digests ccache distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch"
FETCHCOMMAND="/usr/bin/wget -t 5 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}""
GCC_SPECS=""
GENTOO_MIRRORS="http://de-mirror.org/distro/gentoo/ http://gentoo.mneisen.org/ http://gentoo.supp.name/ http://gentoo.mirror.pw.edu.pl/ http://gentoo.tiscali.nl/"
GENTOO_PYTHON_PROCESS_NAME="emerge"
HG="/usr/bin/hg"
HOME="/home/christoph"
INFOPATH="/usr/share/info:/usr/share/binutils-data/i686-pc-linux-gnu/2.18/info:/usr/share/gcc-data/i686-pc-linux-gnu/4.3.4/info"
INPUT_DEVICES="evdev"
KERNEL="linux"
LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text"
LC_CTYPE="de_DE.utf8"
LDFLAGS="-Wl,-O1"
LESS="-R -M --shift 5"
LESSOPEN="|lesspipe.sh %s"
LINGUAS="en de"
LOGNAME="root"
LS_COLORS="rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:"
MAIL="/var/mail/christoph"
MAKEOPTS="-j5"
MANPATH="/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/i686-pc-linux-gnu/2.18/man:/usr/share/gcc-data/i686-pc-linux-gnu/4.3.4/man:/etc/java-config/system-vm/man/:/usr/lib/php5/man/"
NETBEANS="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml"
NOCOLOR="true"
OPENGL_PROFILE="xorg-x11"
PAGER="/usr/bin/less"
PATH="/bin:/sbin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin:/opt/bin"
PKGDIR="/usr/portage/packages"
PORTAGE_ARCHLIST="ppc x86-openbsd ppc-openbsd ppc64 x86-winnt x86-fbsd ppc-aix alpha arm x86-freebsd s390 amd64 arm-linux x86-macos x64-openbsd ia64-hpux hppa x86-netbsd amd64-linux ia64-linux x86 sparc-solaris x64-freebsd sparc64-solaris x86-linux x64-macos sparc m68k-mint ia64 mips ppc-macos x86-interix hppa-hpux amd64-fbsd x64-solaris mips-irix m68k sh x86-solaris sparc-fbsd"
PORTAGE_BINHOST_CHUNKSIZE="3000"
PORTAGE_BIN_PATH="/usr/lib/portage/bin"
PORTAGE_COMPRESS_EXCLUDE_SUFFIXES="css gif htm[l]? jp[e]?g js pdf png"
PORTAGE_CONFIGROOT="/"
PORTAGE_DEBUG="0"
PORTAGE_DEPCACHEDIR="/var/cache/edb/dep"
PORTAGE_ELOG_CLASSES="warn error info log qa"
PORTAGE_ELOG_MAILFROM="portage@localhost"
PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}"
PORTAGE_ELOG_MAILURI="root"
PORTAGE_ELOG_SYSTEM="save"
PORTAGE_FETCH_CHECKSUM_TRY_MIRRORS="5"
PORTAGE_FETCH_RESUME_MIN_SIZE="350K"
PORTAGE_GID="250"
PORTAGE_INST_GID="0"
PORTAGE_INST_UID="0"
PORTAGE_NICENESS="19"
PORTAGE_PYM_PATH="/usr/lib/portage/pym"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_RSYNC_RETRIES="3"
PORTAGE_SYNC_STALE="30"
PORTAGE_TMPDIR="/var/tmp"
PORTAGE_VERBOSE="1"
PORTAGE_WORKDIR_MODE="0700"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage/layman/science /usr/local/portage/layman/cj-overlay"
PROFILE_ONLY_VARIABLES="ARCH ELIBC KERNEL USERLAND"
PYTHONDOCS="/usr/share/doc/python-docs-2.6.4/html/library"
PYTHONDOCS_2_6="/usr/share/doc/python-docs-2.6.4/html/library"
PYTHONDOCS_3_1="/usr/share/doc/python-docs-3.1.2/html/library"
PYTHONDONTWRITEBYTECODE="1"
RESUMECOMMAND="/usr/bin/wget -c -t 5 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}""
ROOT="/"
ROOTPATH="/opt/bin:/usr/i686-pc-linux-gnu/gcc-bin/4.3.4"
RPMDIR="/usr/portage/rpm"
RUBY_TARGETS="ruby18"
SHELL="/bin/bash"
STAGE1_USE="hardened nptl nptlonly pic"
SUDO_COMMAND="/usr/bin/emerge --info"
SUDO_GID="100"
SUDO_UID="1000"
SUDO_USER="christoph"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
TERM="xterm"
USE="a52 aac aalib acl acpi alsa apache2 apm bash-completion berkdb bzip2 cddb cdparanoia cli cracklib crypt cups curl cvs cxx dbus djvu doc dri dts dvd encode examples expat ffmpeg ftp gd gdbm ggi gif gnuplot gpm hal hardened iconv imagemagick java javascript jpeg latex lua lzo mad mmx modules mp3 mpeg mudflap musepack ncurses nls nptl nptlonly ocamlopt ogg openal openmp pam pcre pdf perl php pic plotutils png pppd python quicktime readline reflection samba session slang speex spl sse sse2 sse3 ssl subversion sysfs syslog tcl tcpd theora threads tiff truetype urandom v4l v4l2 vim-syntax vorbis win32codecs x86 xml xorg zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en de" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="intel vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
USER="root"
USERLAND="GNU"
USERNAME="root"
USE_EXPAND="ALSA_CARDS ALSA_PCM_PLUGINS APACHE2_MODULES APACHE2_MPMS CAMERAS CROSSCOMPILE_OPTS DVB_CARDS ELIBC FCDSL_CARDS FOO2ZJS_DEVICES FRITZCAPI_CARDS INPUT_DEVICES KERNEL LCD_DEVICES LINGUAS LIRC_DEVICES MISDN_CARDS NETBEANS_MODULES NGINX_MODULES_HTTP NGINX_MODULES_MAIL QEMU_SOFTMMU_TARGETS QEMU_USER_TARGETS RUBY_TARGETS SANE_BACKENDS USERLAND VIDEO_CARDS XTABLES_ADDONS"
USE_EXPAND_HIDDEN="CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND"
USE_ORDER="env:pkg:conf:defaults:pkginternal:env.d"
VIDEO_CARDS="intel vesa"
XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
XZ_OPT="--memory=max"
Comment 2 Christoph Junghans (RETIRED) gentoo-dev 2010-06-07 13:39:47 UTC
The 'eautoreconf' in the ebuild is the problem, for some reason the name transform (docbook2* -> docbook2*.pl) does not take place!

After a little bit of playing I found out that if
automake:1.10 is installed, it works.

So adding a WANT_AUTOMAKE="1.10" in the head of the ebuild should fix the problem.
Comment 3 Patrick Lauer gentoo-dev 2010-06-09 16:26:54 UTC
+  09 Jun 2010; Patrick Lauer <patrick@gentoo.org> docbook2X-0.8.8-r2.ebuild:
+  Fixing automake dep for #318297

Thanks for the pointer :)
Comment 4 SpanKY gentoo-dev 2012-05-25 03:26:52 UTC
Commit message: Update to EAPI=4, and make --program-transform-name work with newer versions of autotools
http://sources.gentoo.org/app-text/docbook2X/docbook2X-0.8.8-r2.ebuild?r1=1.18&r2=1.19