Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 311151 - dev-db/mysql-5.1.45: config failing
Summary: dev-db/mysql-5.1.45: config failing
Status: RESOLVED TEST-REQUEST
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: High normal (vote)
Assignee: Gentoo Linux MySQL bugs team
URL:
Whiteboard:
Keywords:
: 311217 (view as bug list)
Depends on:
Blocks:
 
Reported: 2010-03-24 17:08 UTC by Juergen Rose
Modified: 2010-03-25 18:24 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
/etc/mysql/my.cnf (my.cnf,4.10 KB, text/plain)
2010-03-24 17:10 UTC, Juergen Rose
Details
/etc/mysql/my.cnf (my.cnf,4.12 KB, text/plain)
2010-03-24 17:41 UTC, Juergen Rose
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Juergen Rose 2010-03-24 17:08:39 UTC
After installing mysql I tried to init the database system:

root@orca:/usr(40)# emerge -vuDN mysql
...
 * You might want to run:
 * "emerge --config =dev-db/mysql-5.1.45"
 * if this is a new install.
 * 
>>> Regenerating /etc/ld.so.cache...
>>> Auto-cleaning packages...

>>> No outdated packages were found on your system.
...
root@orca:/usr(41)# emerge --config =dev-db/mysql-5.1.45


Configuring pkg...

 * Please provide a password for the mysql 'root' user now,
 * or in the MYSQL_ROOT_PASSWORD env var.
 * Avoid ["'\_%] characters in the password
    >
 * Retype the password
    >
 * Creating the mysql database and setting proper
 * permissions on it ...
 * Starting mysqld ...                                                                                                                                            [ ok ]
 * Setting root password ...
//usr/bin/mysql: unknown variable 'character-set-server=utf8'                                                                                                    [ !! ]
 * Loading "zoneinfo", this step may require a few seconds ... ...
//usr/bin/mysql: unknown variable 'character-set-server=utf8'                                                                                                    [ ok ]
 * Failed to load zoneinfo!
 * Stopping the server ...
 * Done


Reproducible: Always
Comment 1 Juergen Rose 2010-03-24 17:10:52 UTC
Created attachment 225127 [details]
/etc/mysql/my.cnf
Comment 2 Juergen Rose 2010-03-24 17:11:28 UTC
root@orca:/usr(47)# emerge --info
Portage 2.1.8.3 (default/linux/amd64/10.0/desktop, gcc-4.4.3, glibc-2.11-r1, 2.6.33-gentoo x86_64)
=================================================================
System uname: Linux-2.6.33-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_W3520_@_2.67GHz-with-gentoo-2.0.1
Timestamp of tree: Wed, 24 Mar 2010 15:30:01 +0000
app-shells/bash:     4.1_p2-r1
dev-java/java-config: 2.1.10
dev-lang/python:     2.6.5, 3.1.2
dev-python/pycrypto: 2.1.0
dev-util/cmake:      2.8.1
sys-apps/baselayout: 2.0.1
sys-apps/openrc:     0.6.1-r1
sys-apps/sandbox:    2.2
sys-devel/autoconf:  2.13, 2.65
sys-devel/automake:  1.7.9-r2, 1.8.5-r4, 1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:  2.20.1
sys-devel/gcc:       4.4.3
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6b
virtual/os-headers:  2.6.33
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1 skype-eula"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=core2 -msse4 -mcx16 -msahf -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=core2 -msse4 -mcx16 -msahf -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1"
LINGUAS="de fr"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/science /var/lib/layman/x11 /var/lib/layman/zugaina /var/lib/layman/java-overlay /var/lib/layman/sunrise /usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="64bit X Xaw3d a52 aac abiword acl acpi administrator afs alsa amd64 ao aotuv apache2 applet archive arpack asf aspell assistant atlas audacious audiofile automap automount bash-completion berkdb blas blast bluetooth boo boost branding bzip2 c++ cairo cdda cddb cdf cdio cdparanoia cdr cdrkit cg cgi chm cli consolekit corba cracklib crypt css cuda cups curl cxx daap db dbase dbi dbm dbus designer devhelp device-mapper dga dia djvu doc dri ds2490 dts dv dvb dvd dvdr dvi eds elf emacs emboss empathy encode epiphany evo examples exif expat extensions extra extras fam fame ffmpeg fftw firefox fits flac fltk foomaticdb fortran fpx fts3 fuse galago gcj gd gdal gdbm geolocation geos gif gimp ginac git glade glib glitz gml gmp gmtsuppl gnokii gnome gnome-keyring gnome-print gnuplot gnutls gphoto2 gpm grammar graphics graphtft graphviz grass gs gsl gsm gstreamer gtk guile hal harness hddtemp hdf hdf5 hdri hlapi http httpd hvm iconv icq icu id3 ide imagemagick imap innodb inotify ipod ipv6 ithreads jabber jadetex java java5 java6 jbig john jpeg jpeg2k kde kdrive kerberos kexi kpathsea kqemu kvm ladspa lame lapack latex latex3 lcms ldap lensfun libffi libgda libnotify libsamplerate lm_sensors lua lzo mad mail maildir mailwrapper mapnik math matroska mikmod mkl mmx mmxext mng modules mono moonlight motif mozdevelop mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap multilib musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numarray numeric nvidia obex objc ocaml octave odbc ogdi ogg ole openexr opengl openmp overview pae pam pcre pda pdf perl plotutils plugins png podcast policykit posix postgres postscript ppds pppd preview-latex proj projectx pstricks pulseaudio pymol python python-bindings qemu qhull qt3support qt4 quicktime readline reflection reiserfs rle romio rpc rrdcgi rrdtool samba sasl science sdl secure-delete semantic-desktop server session sip slang slp smbclient smp sms sndfile snmp soup sox speex spell spl sql sqlite sse sse2 ssl startup-notification stlport subtitles subversion suexec svg swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs theora thinkpad threads thunar thunderbird tidy tiff tk tntc tools truetype udev unicode usb userlocales utempter v4l2 virtualbox vorbis wav webdav webdav-serf webkit wmf wxwidgets x264 xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse                evdev               " KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" QEMU_SOFTMMU_TARGETS="i386 ppc ppc64 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18 jruby" USERLAND="GNU" VIDEO_CARDS="nv nvidia nouveau vesa" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 3 Juergen Rose 2010-03-24 17:13:59 UTC
/var/log/mysql/mysqld.err has the following contents:

root@orca:/usr(50)# cat /var/log/mysql/mysqld.err 
100324 18:03:59 [Warning] No argument was provided to --log-bin, and --log-bin-index was not used; so replication may break when this MySQL server acts as a master and has his hostname changed!! Please use '--log-bin=mysqld-bin' to avoid this problem.
100324 18:04:00 [Warning] No argument was provided to --log-bin, and --log-bin-index was not used; so replication may break when this MySQL server acts as a master and has his hostname changed!! Please use '--log-bin=mysqld-bin' to avoid this problem.
100324 18:04:00 [Note] Plugin 'InnoDB' is disabled.
100324 18:04:00 [Note] //usr/sbin/mysqld: ready for connections.
Version: '5.1.45'  socket: '//var/run/mysqld/mysqld24824.sock'  port: 0  Gentoo Linux mysql-5.1.45
100324 18:04:01 [Note] //usr/sbin/mysqld: Normal shutdown

100324 18:04:01 [Note] //usr/sbin/mysqld: Shutdown complete
Comment 4 Juergen Rose 2010-03-24 17:21:57 UTC
After setting log-bin=orca-bin I could start mysql:
root@orca:/usr(55)# /etc/init.d/mysql start
 * Starting  ...
 * Starting  (/etc/mysql/my.cnf)                                                                                                                                 [ ok ]
[3]+  Done                    emacs -i $GEOMETRY $NO_DOS_CONV -name "$BASENAME" "$*"
root@orca:/usr(56)# /etc/init.d/mysql status
 * status: started
Comment 5 Juergen Rose 2010-03-24 17:41:44 UTC
Created attachment 225131 [details]
/etc/mysql/my.cnf
Comment 6 Juergen Rose 2010-03-24 17:55:22 UTC
Corresponding to Bug #306975, it seems to be a know bug, that 
emerge --config =dev-db/mysql-5.1.45 dies and that's why the root password is not set.

But I am also not able to set the password manually.  All the attemps to login into mysql are failing: 

root@orca:/usr/share/mysql/sql-bench(78)# mysql -u root -p
mysql: unknown variable 'character-set-server=utf8'
root@orca:/usr/share/mysql/sql-bench(79)# mysql -u root   
mysql: unknown variable 'character-set-server=utf8'
root@orca:/usr/share/mysql/sql-bench(80)# mysql        
mysql: unknown variable 'character-set-server=utf8'
root@orca:/usr/share/mysql/sql-bench(81)# echo $?
7

Also mysqladmin fails:

root@orca:/usr/share/mysql/sql-bench(84)# /usr/bin/mysqladmin -u root password XXXXXX
/usr/bin/mysqladmin: unknown variable 'character-set-server=utf8'

Comment 7 Robin Johnson archtester Gentoo Infrastructure gentoo-dev Security 2010-03-24 18:27:45 UTC
Fixed in CVS.
Please emerge again and use --config again.
Comment 8 Juergen Rose 2010-03-24 20:10:27 UTC
I resynced and reemerge already two times, but nothing changed:
root@orca:/root(112)# genlop -t mysql | tail -n 16

     Mon Feb 22 10:47:53 2010 >>> virtual/mysql-5.1
       merge time: 5 seconds.

     Sat Feb 27 21:20:02 2010 >>> dev-db/mysql-5.1.44-r1
       merge time: 10 minutes and 58 seconds.

     Wed Mar 24 10:04:47 2010 >>> dev-db/mysql-5.1.45
       merge time: 10 minutes and 10 seconds.

     Wed Mar 24 18:00:05 2010 >>> dev-db/mysql-5.1.45
       merge time: 10 minutes and 10 seconds.

     Wed Mar 24 20:03:26 2010 >>> dev-db/mysql-5.1.45
       merge time: 10 minutes and 10 seconds.

I have two systems with problems and one system where the upgrade to mysql-5.1.45 apparently   works.

At the systems with the problems I upgraded from mysql-5.1.44-r1 to mysql-5.1.45, at the systems where it apparently  works, I upgraded from 5.1.44-r1 over 5.1.44-r2 to 5.1.45. Could it be that there is any connection?

Comment 9 Robin Johnson archtester Gentoo Infrastructure gentoo-dev Security 2010-03-24 21:55:19 UTC
Please get everything to a consistent point.
Ideally 5.1.44-r3 OR 5.1.45-r1.
Make sure that your metadata/timestamp* files say your trees are identical, do this:
# emerge mysql
# etc-update (the only "character-set-server" setting should be under [mysqld]).
# check my.cnf between boxes.
# emerge --config mysql
Comment 10 Robin Johnson archtester Gentoo Infrastructure gentoo-dev Security 2010-03-25 01:21:35 UTC
*** Bug 311217 has been marked as a duplicate of this bug. ***
Comment 11 Juergen Rose 2010-03-25 10:53:36 UTC
The upgrade to mysql-5.1.45-r1 and the following call of dispatch-conf seems to solve this Problem and the problem of Bug 311217 as well. 
Comment 12 Robin Johnson archtester Gentoo Infrastructure gentoo-dev Security 2010-03-25 18:24:17 UTC
closing w/ test-request, please comment/reopen if it occurs again.