'emerge maplotlib' fails with: ... i686-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -O2 -march=pentium4 -fomit-frame-pointer build-2.6/temp.linux-i686-2.6/src/agg_py_transforms.o build-2.6/temp.linux-i686-2.6/src/_gtkagg.o build-2.6/temp.linux-i686-2.6/src/mplutils.o build-2.6/temp.linux-i686-2.6/CXX/cxx_extensions.o build-2.6/temp.linux-i686-2.6/CXX/cxxsupport.o build-2.6/temp.linux-i686-2.6/CXX/IndirectPythonInterface.o build-2.6/temp.linux-i686-2.6/CXX/cxxextensions.o -L/usr/lib -lstdc++ -lm -lfreetype -lz -lstdc++ -lm -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -lpython2.6 -o build-2.6/lib.linux-i686-2.6/matplotlib/backends/_gtkagg.so Running Sphinx v0.6.5 WARNING: extension 'math_symbol_table' has no setup() function; is it really a Sphinx extension module? ACCESS DENIED open_wr: /usr/lib/python2.6/site-packages/sphinx/pycode/Grammar2.6.5.final.0.pickle loading pickled environment... not found animation, api, axes_grid, event_handling, misc, mplot3d, pngsuite, pylab_examples, tests, units, user_interfaces, widgets, building [html]: targets for 83 source files that are out of date updating environment: 466 added, 0 changed, 0 removed /usr/lib/python2.6/site-packages/numpy/core/numeric.py:677: DeprecationWarning: The current behavior of correlate is deprecated for 1.4.0, and will be removed for NumPy 1.5.0. The new behavior fits the conventional definition of correlation: inputs are never swapped, and the second argument is conjugated for complex arrays. DeprecationWarning) ******************************************************************..............................*************************************************************************........................................................................................................................................................................./var/tmp/portage/dev-python/matplotlib-0.99.1.1-r1/work/matplotlib-0.99.1.1/build-2.6/lib.linux-i686-2.6/matplotlib/projections/polar.py:187: UserWarning: The resolution kwarg to Polar plots is now ignored. If you need to interpolate data points, consider running cbook.simple_linear_interpolation on the data before passing to matplotlib. cbook.simple_linear_interpolation on the data before passing to matplotlib.""") Building HTML failed. Running Sphinx v0.6.5 WARNING: extension 'math_symbol_table' has no setup() function; is it really a Sphinx extension module? ACCESS DENIED open_wr: /usr/lib/python2.6/site-packages/sphinx/pycode/Grammar2.6.5.final.0.pickle loading pickled environment... not found animation, api, axes_grid, event_handling, misc, mplot3d, pngsuite, pylab_examples, tests, units, user_interfaces, widgets, building [html]: targets for 466 source files that are out of date updating environment: 466 added, 0 changed, 0 removed ................................................................................................................................................................................................................................................................................................................................................../var/tmp/portage/dev-python/matplotlib-0.99.1.1-r1/work/matplotlib-0.99.1.1/build-2.6/lib.linux-i686-2.6/matplotlib/projections/polar.py:187: UserWarning: The resolution kwarg to Polar plots is now ignored. If you need to interpolate data points, consider running cbook.simple_linear_interpolation on the data before passing to matplotlib. cbook.simple_linear_interpolation on the data before passing to matplotlib.""") Building HTML failed. >>> Source compiled. --------------------------- ACCESS VIOLATION SUMMARY --------------------------- LOG FILE "/var/log/sandbox/sandbox-6724.log" VERSION 1.0 FORMAT: F - Function called FORMAT: S - Access Status FORMAT: P - Path as passed to function FORMAT: A - Absolute Path (not canonical) FORMAT: R - Canonical Path FORMAT: C - Command Line F: open_wr S: deny P: /usr/lib/python2.6/site-packages/sphinx/pycode/Grammar2.6.5.final.0.pickle A: /usr/lib/python2.6/site-packages/sphinx/pycode/Grammar2.6.5.final.0.pickle R: /usr/lib/python2.6/site-packages/sphinx/pycode/Grammar2.6.5.final.0.pickle C: /usr/bin/python2.6 /usr/bin/sphinx-build-2.6 -P -b html -d build/doctrees . build/html F: open_wr S: deny P: /usr/lib/python2.6/site-packages/sphinx/pycode/Grammar2.6.5.final.0.pickle A: /usr/lib/python2.6/site-packages/sphinx/pycode/Grammar2.6.5.final.0.pickle R: /usr/lib/python2.6/site-packages/sphinx/pycode/Grammar2.6.5.final.0.pickle C: /usr/bin/python2.6 /usr/bin/sphinx-build-2.6 -P -b html -d build/doctrees . build/html Reproducible: Always root@tiger:/root(7)# emerge --info Portage 2.1.8.3 (default/linux/x86/10.0/desktop, gcc-4.4.3, glibc-2.11-r1, 2.6.32.6 i686) ================================================================= System uname: Linux-2.6.32.6-i686-Intel-R-_Pentium-R-_4_CPU_1.60GHz-with-gentoo-2.0.1 Timestamp of tree: Tue, 23 Mar 2010 10:00:24 +0000 distcc 3.1 i686-pc-linux-gnu [disabled] app-shells/bash: 4.1_p2-r1 dev-java/java-config: 2.1.10 dev-lang/python: 2.6.5, 3.1.2 dev-python/pycrypto: 2.1.0 dev-util/cmake: 2.8.1 sys-apps/baselayout: 2.0.1 sys-apps/openrc: 0.6.1 sys-apps/sandbox: 2.2 sys-devel/autoconf: 2.13, 2.65 sys-devel/automake: 1.4_p6, 1.6.3, 1.7.9-r2, 1.8.5-r3, 1.9.6-r3, 1.10.3, 1.11.1 sys-devel/binutils: 2.20.1 sys-devel/gcc: 4.4.3 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6b virtual/os-headers: 2.6.33 ACCEPT_KEYWORDS="x86 ~x86" ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1 skype-eula" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=pentium4 -fomit-frame-pointer" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -march=pentium4 -fomit-frame-pointer" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch" FFLAGS="-O2 -march=pentium4 -fomit-frame-pointer" GENTOO_MIRRORS="ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/ http://ftp.uni-erlangen.de/pub/mirrors/gentoo ftp://ftp.uni-erlangen.de/pub/mirrors/gentoo ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://ftp.join.uni-muenster.de/pub/linux/distributions/gentoo http://mirrors.sec.informatik.tu-darmstadt.de/gentoo/ http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ " LDFLAGS="-Wl,-O1" LINGUAS="de fr" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/science /var/lib/layman/java-overlay /var/lib/layman/zugaina /var/lib/layman/x11 /var/lib/layman/sunrise /usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X Xaw3d a52 aac abiword acl acpi administrator afs alsa ao aotuv apache2 applet archive arpack asf aspell assistant atlas audacious audiofile automap automount bash-completion beagle berkdb blas blast bluetooth boo boost branding bzip2 c++ cairo cdda cddb cdf cdio cdparanoia cdr cdrkit cgi chm cli consolekit corba cracklib crypt css cups curl cxx daap db dbase dbi dbm dbus designer devhelp device-mapper dga dia djvu doc dri ds2490 dts dv dvb dvd dvdr dvi eds elf emacs emboss empathy encode epiphany evo examples exif expat extensions extra extras fam fame ffmpeg fftw firefox fits flac fltk foomaticdb fortran fpx fts3 fuse galago gcj gd gdal gdbm geolocation geos gif gimp ginac git glade glib glitz gml gmp gmtsuppl gnokii gnome gnome-keyring gnome-print gnuplot gnutls gphoto2 gpm grammar graphics graphtft graphviz grass gs gsl gsm gstreamer gtk guile hal harness hddtemp hdf hdf5 hdri hlapi http httpd iconv icq icu id3 ide imagemagick imap innodb inotify ipod ipv6 irda ithreads jabber jadetex java java5 java6 jbig john jpeg jpeg2k kde kdrive kerberos kexi kpathsea kqemu ladspa lame lapack latex latex3 lcms ldap lensfun libffi libgda libnotify libsamplerate lirc lm_sensors lua lzo mad mail maildir mailwrapper mapnik math matroska mikmod mkl mmx mmxext mng modules mono moonlight motif mozdevelop mozilla mp3 mp4 mpeg mplayer mtp mudflap musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numarray numeric obex objc ocaml octave odbc ogdi ogg ole openexr opengl openmp overview pae pam pcre pda pdf perl plotutils plugins png podcast policykit posix postgres postscript ppds pppd preview-latex proj projectx pstricks pulseaudio pymol python python-bindings qemu qhull qt3support qt4 quicktime readline reflection reiserfs rle rpc rrdcgi rrdtool samba sasl science sdl secure-delete semantic-desktop server session sip slang slp smbclient smp sms sndfile snmp soup sox speex spell spl sql sqlite sse sse2 ssl startup-notification stlport subtitles subversion suexec svg swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs theora threads thunar thunderbird tidy tiff tk tntc tools truetype udev unicode usb userlocales utempter v4l2 virtualbox vorbis wav webdav webdav-serf webkit win32codecs wmf wxwidgets x264 x86 xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="via82xx" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" DVB_CARDS="tda10045 tda10046lifeview" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev " KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" QEMU_SOFTMMU_TARGETS="i386 ppc ppc64 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18 jruby" USERLAND="GNU" VIDEO_CARDS="mga matrox vesa via openchrome" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, MAKEOPTS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
*** This bug has been marked as a duplicate of bug 266015 ***
reinstalling sphinx and numpy solved the bug for me.
After libpng update to 1.4.2 dev-python/matplotlib-0.99.1.1-r1 fails to install because of missing Matplotlib.pdf emerge matplotlib ... copying build-2.6/lib.linux-x86_64-2.6/pylab.py -> /var/tmp/portage/dev-python/matplotlib-0.99.1.1-r1/image/usr/lib64/python2.6/site-packages warning: install_lib: byte-compiling is disabled, skipping. running install_egg_info Writing /var/tmp/portage/dev-python/matplotlib-0.99.1.1-r1/image/usr/lib64/python2.6/site-packages/matplotlib-0.99.1.1-py2.6.egg-info install: cannot stat `doc/build/latex/Matplotlib.pdf': No such file or directory !!! doins: doc/build/latex/Matplotlib.pdf does not exist * ERROR: dev-python/matplotlib-0.99.1.1-r1 failed: I reinstalled numpy, app-text/poppler, texlive-core, luatex, dev-python/imaging, sphinx, but it did not help. root@moose:/home/rose(223)# qlist -Iv numpy app-text/poppler texlive-core luatexdev-python/imaging dev-python/sphinx app-text/poppler-0.12.4-r3 app-text/poppler-data-0.4.2 app-text/texlive-core-2009-r1 dev-python/numpy-1.4.1 dev-python/sphinx-0.6.5
Sorry, that's not the same problem so it deserves its own bug report.
Hi Jeroen, you are right, the issue fits better to Bug #307881.
