305849 – sci-biology/TopHat: new package request

Bug 305849 - sci-biology/TopHat: new package request

Summary: sci-biology/TopHat: new package request

Status:	RESOLVED INVALID

Alias:	None

Product:	Gentoo Linux
Classification:	Unclassified
Component:	New packages (show other bugs)
Hardware:	All Linux

Importance:	High enhancement
Assignee:	Gentoo Linux bug wranglers

URL:	http://tophat.cbcb.umd.edu
Whiteboard:
Keywords:

Depends on:
Blocks:

Reported:	2010-02-19 09:39 UTC by Martin Mokrejš
Modified:	2010-02-19 09:41 UTC (History)
CC List:	0 users

See Also:
Package list:
Runtime testing required:	---

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Description Martin Mokrejš 2010-02-19 09:39:52 UTC

http://bioinformatics.oxfordjournals.org/cgi/content/full/25/9/1105

TopHat is a a fast short-read aligner using bowtie to align RNA-Seq reads (25-50nt) to reference transcriptome/genome.

Comment 1 Martin Mokrejš 2010-02-19 09:41:57 UTC

Sorry, the searches did not show me the already existing tophat package, don't know why.