I have just tried to follow the tutorial in the URL I provide, but whenever I load a protein pdb and select Wizard -> Mutagenesis I get this: === CmdLoad: "/home/user/DOCKING/galectin-3 1KJL/protein.pdb" loaded as "protein". Traceback (most recent call last): File "/usr/lib64/python2.6/site-packages/pymol/parser.py", line 254, in parse self.result=apply(layer.kw[0],layer.args,layer.kw_args) File "/usr/lib64/python2.6/site-packages/pymol/wizarding.py", line 86, in wizard r = _wizard(name,arg,kwd,0,_self=_self) File "/usr/lib64/python2.6/site-packages/pymol/wizarding.py", line 45, in _wizard wiz = apply(getattr(mod_obj,oname),arg,kwd) File "/usr/lib64/python2.6/site-packages/pymol/wizard/mutagenesis.py", line 57, in __init__ "/data/chempy/sidechains/sc_bb_ind.pkl") File "/usr/lib64/python2.6/site-packages/chempy/pkl.py", line 23, in fromFile fp = self.my_open(fname,'rb') File "/usr/lib64/python2.6/site-packages/chempy/__init__.py", line 167, in my_open return open(fname,mode) IOError: [Errno 2] No such file or directory: '/usr/lib64/python2.6/site-packages/pymol/data/chempy/sidechains/sc_bb_ind.pkl' === It seems pymol is looking for the file in the wrong location. In my amd64 box the correct one is /usr/share/pymol/data/chempy/sidechains/sc_bb_ind.pkl How can I fix that manually? Can it be fixed in the ebuild? Thanks. Reproducible: Always
Thanks for reporting.
No, thanks to you for solving it blazingly fast. It is a pleasure to have people like you working on Gentoo. As a regular user I can't thank you enough all of your efforts.
