Please stabilize sci-biology/vienna-rna-1.8.3. Note: Because of the complexity of science package testing, a compile test is sufficient from the arch teams
fails to compile on x86 (amd64 builds): mv -f .deps/wmatch.Tpo .deps/wmatch.Po i686-pc-linux-gnu-g++ -O2 -march=i686 -pipe -L../g2-0.70 -L../../lib -Wl,-O1 -o RNAforester Arguments.o glib.o main.o ppforestbase.o progressive_align.o rna_profile_alignment.o rna_alignment.o rna_algebra.o rna_alphabet.o rnaforest.o rnaforestsz.o rnafuncs.o rnaforester_options.o wmatch.o -lg2 -lRNA /usr/lib/gcc/i686-pc-linux-gnu/4.3.4/../../../../i686-pc-linux-gnu/bin/ld: skipping incompatible ../g2-0.70/libg2.a when searching for -lg2 /usr/lib/gcc/i686-pc-linux-gnu/4.3.4/../../../../i686-pc-linux-gnu/bin/ld: cannot find -lg2 collect2: ld returned 1 exit status make[4]: *** [RNAforester] Error 1 make[4]: Leaving directory `/var/tmp/portage/sci-biology/vienna-rna-1.8.3/work/ViennaRNA-1.8.3/RNAforester/src' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/var/tmp/portage/sci-biology/vienna-rna-1.8.3/work/ViennaRNA-1.8.3/RNAforester' make[2]: *** [all] Error 2 make[2]: Leaving directory `/var/tmp/portage/sci-biology/vienna-rna-1.8.3/work/ViennaRNA-1.8.3/RNAforester' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/var/tmp/portage/sci-biology/vienna-rna-1.8.3/work/ViennaRNA-1.8.3' make: *** [all] Error 2 * * ERROR: sci-biology/vienna-rna-1.8.3 failed. * Call stack: * ebuild.sh, line 49: Called src_compile * environment, line 3072: Called die * The specific snippet of code: * emake || die "Compilation failed."; * The die message: * Compilation failed. Portage 2.1.6.13 (default/linux/x86/10.0/desktop, gcc-4.3.4, glibc-2.9_p20081201-r2, 2.6.31.5 i686) ================================================================= System uname: Linux-2.6.31.5-i686-Intel-R-_Core-TM-2_Duo_CPU_T8300_@_2.40GHz-with-gentoo-1.12.11.1 Timestamp of tree: Fri, 30 Oct 2009 12:00:02 +0000 distcc 3.1 i686-pc-linux-gnu [disabled] app-shells/bash: 4.0_p28 dev-java/java-config: 2.1.9-r1 dev-lang/python: 2.4.6, 2.5.4-r3, 2.6.2-r1 dev-python/pycrypto: 2.0.1-r8 dev-util/cmake: 2.6.4 sys-apps/baselayout: 1.12.11.1 sys-apps/sandbox: 1.6-r2 sys-devel/autoconf: 2.13, 2.63-r1 sys-devel/automake: 1.4_p6, 1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2 sys-devel/binutils: 2.18-r3 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6a virtual/os-headers: 2.6.27-r2 ACCEPT_KEYWORDS="x86" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=i686 -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /opt/openjms/config /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config /var/bind /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-O2 -march=i686 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="collision-protect distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict test unmerge-orphans userfetch userpriv usersandbox" GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo" LANG="en_GB.UTF-8" LDFLAGS="-Wl,-O1" LINGUAS="en en_GB de" MAKEOPTS="-j2" PKGDIR="/mnt/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X a52 aac acl acpi alsa apache2 avahi berkdb bluetooth branding bzip2 cairo cdr cli consolekit cracklib crypt cups dbus dri dts dvd dvdr eds emboss encode evo examples fam firefox flac fortran gdbm gif gnome gpm gstreamer gtk hal iconv ipv6 isdnlog jpeg kde ldap libnotify mad mikmod modules mp3 mp4 mpeg mudflap ncurses nls nptl nptlonly objc objc++ ogg opengl openmp pam pcre pdf perl png ppds pppd python qt3support qt4 quicktime readline reflection sdl session source spell spl ssl startup-notification svg sysfs tcpd test thunar tiff truetype unicode usb vorbis win32codecs x264 x86 xml xorg xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en en_GB de" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga neomagic nv r128 radeon savage sis tdfx trident vesa vga via vmware voodoo" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY
(In reply to comment #1) > fails to compile on x86 (amd64 builds): > Fixed (make clean was required), sorry about that. Please try again.
amd64/x86 stable, all arches done.
