EMPI is a utily for installing multiple MPI implementation on the same machine at the same time. I installed OpenMPI with empi. If i want to install netgen with MPI support, OpenMPI appears in the dependency list, even though it's already installed through EMPI. The "new" openmpi is likely to conflict with the "old" mpi installed with Empi, so it should be possible to tell portage that OpenMPI is already installed with EMPI Reproducible: Always Steps to Reproduce: 1. install openmpi with empi 2. install netgen with "mpi" USE flag 3. detect extra dependency of OpenMPI Expected Results: the software should detect that OpenMPI is already installed Portage 2.1.6.13 (default/linux/amd64/2008.0, gcc-4.3.2, glibc-2.9_p20081201-r2, 2.6.30-gentoo-r5.0 x86_64) ================================================================= System uname: Linux-2.6.30-gentoo-r5.0-x86_64-Intel-R-_Xeon-R-_CPU_E5420_@_2.50GHz-with-gentoo-1.12.11.1 Timestamp of tree: Wed, 14 Oct 2009 01:45:01 +0000 ccache version 2.4 [enabled] app-shells/bash: 4.0_p28 dev-java/java-config: 2.1.8-r1 dev-lang/python: 2.6.2-r1 dev-util/ccache: 2.4-r7 sys-apps/baselayout: 1.12.11.1 sys-apps/sandbox: 1.6-r2 sys-devel/autoconf: 2.63-r1 sys-devel/automake: 1.9.6-r2, 1.10.2 sys-devel/binutils: 2.18-r3 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6a virtual/os-headers: 2.6.27-r2 ABI="amd64" ACCEPT_KEYWORDS="amd64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ARCH="amd64" ASFLAGS_x86="--32" AUTOCLEAN="yes" CBUILD="x86_64-pc-linux-gnu" CCACHE_SIZE="2G" CDEFINE_amd64="__x86_64__" CDEFINE_x86="__i386__" CFLAGS="-O2 -march=native -pipe -fomit-frame-pointer" CFLAGS_x86="-m32" CHOST="x86_64-pc-linux-gnu" CHOST_amd64="x86_64-pc-linux-gnu" CHOST_x86="i686-pc-linux-gnu" CLEAN_DELAY="5" COLLISION_IGNORE="/lib/modules" CONFIG_PROTECT="/etc /var/spool/torque" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/udev/rules.d" CVS_RSH="ssh" CXXFLAGS="-O2 -march=native -pipe -fomit-frame-pointer" DEFAULT_ABI="amd64" DISTDIR="/usr/portage/distfiles" EDITOR="/usr/bin/vim" ELIBC="glibc" EMERGE_DEFAULT_OPTS="--ask --verbose" EMERGE_WARNING_DELAY="10" ESELECT_MPI_IMP="mpi-ompi" FEATURES="ccache distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch" FETCHCOMMAND="/usr/bin/wget -t 5 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}"" GCC_SPECS="" GDK_USE_XFT="1" GENTOO_MIRRORS="http://trumpetti.atm.tut.fi/gentoo/ http://files.gentoo.gr/ ftp://de-mirror.org/distro/gentoo/ http://gentoo.tups.lv/source/ http://gentoo.mirrors.tds.net/gentoo/ ftp://ftp.unina.it/pub/linux/distributions/gentoo" HOME="/root" IBPATH="/usr/bin" INFOPATH="/usr/share/info:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.18/info:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.2/info" INPUT_DEVICES="evdev keyboard mouse" JAVAC="/etc/java-config-2/current-system-vm/bin/javac" JAVA_HOME="/etc/java-config-2/current-system-vm" JDK_HOME="/etc/java-config-2/current-system-vm" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LDFLAGS="-Wl,-O1" LDFLAGS_x86="-m elf_i386" LD_LIBRARY_PATH="/usr/lib64/mpi/mpi-ompi/usr/lib64:" LESS="-R -M --shift 5" LESSOPEN="|lesspipe.sh %s" LIBDIR_amd64="lib64" LIBDIR_amd64_fbsd="lib64" LIBDIR_ppc="lib32" LIBDIR_ppc64="lib64" LIBDIR_sparc32="lib32" LIBDIR_sparc64="lib64" LIBDIR_x86="lib32" LIBDIR_x86_fbsd="lib32" LINGUAS="it en" LOGNAME="root" LS_COLORS="rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:" MAIL="/var/mail/root" MAKEOPTS="-j9" MANPATH="/usr/lib64/mpi/mpi-ompi/usr/share/man:/etc/java-config-2/current-system-vm/man:/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.18/man:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.2/man:/etc/java-config/system-vm/man/" MULTILIB_ABIS="amd64 x86" MULTILIB_STRICT_DENY="64-bit.*shared object" MULTILIB_STRICT_DIRS="/lib32 /lib /usr/lib32 /usr/lib /usr/kde/*/lib32 /usr/kde/*/lib /usr/qt/*/lib32 /usr/qt/*/lib /usr/X11R6/lib32 /usr/X11R6/lib" MULTILIB_STRICT_EXEMPT="(perl5|gcc|gcc-lib|binutils|eclipse-3|debug|portage)" NETBEANS="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" OPENGL_PROFILE="xorg-x11" PAGER="/usr/bin/less" PATH="/usr/lib64/mpi/mpi-ompi/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.2" PBS_SERVER_HOME="/var/spool/torque" PKGDIR="/usr/portage/packages" PORTAGE_ARCHLIST="ppc x86-openbsd ppc-openbsd ppc64 x86-winnt x86-fbsd ppc-aix alpha arm x86-freebsd s390 amd64 x86-macos x64-openbsd ia64-hpux hppa x86-netbsd amd64-linux ia64-linux x86 sparc-solaris x64-freebsd sparc64-solaris x86-linux x64-macos sparc m68k-mint ia64 mips ppc-macos x86-interix hppa-hpux amd64-fbsd x64-solaris mips-irix m68k sh x86-solaris sparc-fbsd" PORTAGE_BINHOST_CHUNKSIZE="3000" PORTAGE_BIN_PATH="/usr/lib64/portage/bin" PORTAGE_COMPRESS_EXCLUDE_SUFFIXES="css gif htm[l]? jp[e]?g js pdf png" PORTAGE_CONFIGROOT="/" PORTAGE_DEBUG="0" PORTAGE_DEPCACHEDIR="/var/cache/edb/dep" PORTAGE_ELOG_CLASSES="log warn error" PORTAGE_ELOG_MAILFROM="portage@localhost" PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}" PORTAGE_ELOG_MAILURI="root" PORTAGE_ELOG_SYSTEM="save_summary echo" PORTAGE_FETCH_CHECKSUM_TRY_MIRRORS="5" PORTAGE_FETCH_RESUME_MIN_SIZE="350K" PORTAGE_GID="250" PORTAGE_INST_GID="0" PORTAGE_INST_UID="0" PORTAGE_PYM_PATH="/usr/lib64/portage/pym" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_RSYNC_RETRIES="3" PORTAGE_TMPDIR="/var/tmp" PORTAGE_VERBOSE="1" PORTAGE_WORKDIR_MODE="0700" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage/layman/science" PROFILE_ONLY_VARIABLES="ARCH ELIBC KERNEL USERLAND" PWD="/root" RESUMECOMMAND="/usr/bin/wget -c -t 5 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}"" ROOT="/" ROOTPATH="/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.2" RPMDIR="/usr/portage/rpm" SHELL="/bin/bash" SHLVL="1" SSH_CLIENT="93.38.71.74 58944 22" SSH_CONNECTION="93.38.71.74 58944 130.192.5.61 22" SSH_TTY="/dev/pts/2" STAGE1_USE="multilib nptl nptlonly unicode" SYMLINK_LIB="yes" SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage" TERM="xterm-color" USE="X acl acpi amd64 apache2 bash-completion bzip2 cairo ccache cli cracklib crypt cscope dbus diags dri fortran gd gif git gnome gtk hal heterogeneous iconv ipath isdnlog iser java jpeg kdeenablefinal kdehiddenvisibility libffi metis mlx4 mmx modules mpi-threads mthca mudflap multilib mysql ncurses nls nptl nptlonly nsplugin nvidia openal opengl openmp opensm openssl pbs pcre perl png pppd python rdma rds readline reflection reiserfs romio session spl sqlite srp sse sse2 ssh ssl subversion svg symlink sysfs tcpd threads tiff vim vnic vt xfs xorg xulrunner zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="evdev keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="it en" USERLAND="GNU" VIDEO_CARDS="vesa nvidia nv radeon" USER="root" USERLAND="GNU" USE_EXPAND="ALSA_CARDS ALSA_PCM_PLUGINS APACHE2_MODULES APACHE2_MPMS CAMERAS CROSSCOMPILE_OPTS DVB_CARDS ELIBC FCDSL_CARDS FOO2ZJS_DEVICES FRITZCAPI_CARDS INPUT_DEVICES KERNEL LCD_DEVICES LINGUAS LIRC_DEVICES MISDN_CARDS NETBEANS_MODULES QEMU_SOFTMMU_TARGETS QEMU_USER_TARGETS SANE_BACKENDS USERLAND VIDEO_CARDS" USE_EXPAND_HIDDEN="CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND" USE_ORDER="env:pkg:conf:defaults:pkginternal:env.d" VIDEO_CARDS="vesa nvidia nv radeon" _="/usr/bin/emerge"
(In reply to comment #0) > EMPI is a utily for installing multiple MPI implementation on the same machine > at the same time. I installed OpenMPI with empi. If i want to install netgen > with MPI support, OpenMPI appears in the dependency list, even though it's > already installed through EMPI. The "new" openmpi is likely to conflict with > the "old" mpi installed with Empi, so it should be possible to tell portage > that OpenMPI is already installed with EMPI The two OpenMPI installs should not conflict at all, as that was the whole point of empi. If they do, please file a separate bug. Netgen would need to be ported to use mpi.eclass in order to work with classed (empi) MPI implementations. That's not likely to happen unless I get bored or mpi.eclass makes it into the main tree. Resolving as WONTFIX due to this.
