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Bug 289037 - [gentoo-science] ibutils don't compile
Summary: [gentoo-science] ibutils don't compile
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: High normal
Assignee: Gentoo Science Related Packages
URL:
Whiteboard: [sci overlay]
Keywords: InOverlay
Depends on:
Blocks:
 
Reported: 2009-10-14 12:46 UTC by Vittorio
Modified: 2009-10-15 13:26 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build log of the compilation failure (build.log,325.98 KB, text/plain)
2009-10-14 14:09 UTC, Vittorio
Details
adding patches to ebuild (ibutils-1.2.diff,411 bytes, patch)
2009-10-14 15:25 UTC, Kacper Kowalik (Xarthisius) (RETIRED)
Details | Diff
fixing compilation dependencies (ibutils-1.2-autotools.patch,901 bytes, patch)
2009-10-14 15:26 UTC, Kacper Kowalik (Xarthisius) (RETIRED)
Details | Diff
fixing glib 2.10 issues (ibutils-1.2-glib-2.10.patch,943 bytes, patch)
2009-10-14 15:26 UTC, Kacper Kowalik (Xarthisius) (RETIRED)
Details | Diff

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Description Vittorio 2009-10-14 12:46:09 UTC
emerge ibutils fails compiling with errors and warnings like "warning: deprecated conversion from string constant to 'char*'" or "warning: 'str_token' may be used uninitialized in this function"

Reproducible: Always

Steps to Reproduce:
1.emerge ibutils

Actual Results:  
compilation error

Expected Results:  
compilation success

my emerge --info
Portage 2.1.6.13 (default/linux/amd64/2008.0, gcc-4.3.2, glibc-2.9_p20081201-r2, 2.6.30-gentoo-r5.0 x86_64)
=================================================================
System uname: Linux-2.6.30-gentoo-r5.0-x86_64-Intel-R-_Xeon-R-_CPU_E5420_@_2.50GHz-with-gentoo-1.12.11.1
Timestamp of tree: Wed, 14 Oct 2009 01:45:01 +0000
ccache version 2.4 [enabled]
app-shells/bash:     4.0_p28
dev-java/java-config: 2.1.8-r1
dev-lang/python:     2.6.2-r1
dev-util/ccache:     2.4-r7
sys-apps/baselayout: 1.12.11.1
sys-apps/sandbox:    1.6-r2
sys-devel/autoconf:  2.63-r1
sys-devel/automake:  1.9.6-r2, 1.10.2
sys-devel/binutils:  2.18-r3
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6a
virtual/os-headers:  2.6.27-r2
ABI="amd64"
ACCEPT_KEYWORDS="amd64"
ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci"
ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol"
APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias"
ARCH="amd64"
ASFLAGS_x86="--32"
AUTOCLEAN="yes"
CBUILD="x86_64-pc-linux-gnu"
CCACHE_SIZE="2G"
CDEFINE_amd64="__x86_64__"
CDEFINE_x86="__i386__"
CFLAGS="-O2 -march=native -pipe -fomit-frame-pointer"
CFLAGS_x86="-m32"
CHOST="x86_64-pc-linux-gnu"
CHOST_amd64="x86_64-pc-linux-gnu"
CHOST_x86="i686-pc-linux-gnu"
CLEAN_DELAY="5"
COLLISION_IGNORE="/lib/modules"
CONFIG_PROTECT="/etc /var/spool/torque"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/udev/rules.d"
CVS_RSH="ssh"
CXXFLAGS="-O2 -march=native -pipe -fomit-frame-pointer"
DEFAULT_ABI="amd64"
DISTDIR="/usr/portage/distfiles"
EDITOR="/usr/bin/vim"
ELIBC="glibc"
EMERGE_DEFAULT_OPTS="--ask --verbose"
EMERGE_WARNING_DELAY="10"
ESELECT_MPI_IMP="mpi-ompi"
FEATURES="ccache distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch"
FETCHCOMMAND="/usr/bin/wget -t 5 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}""
GCC_SPECS=""
GDK_USE_XFT="1"
GENTOO_MIRRORS="http://trumpetti.atm.tut.fi/gentoo/ http://files.gentoo.gr/ ftp://de-mirror.org/distro/gentoo/ http://gentoo.tups.lv/source/ http://gentoo.mirrors.tds.net/gentoo/ ftp://ftp.unina.it/pub/linux/distributions/gentoo"
HOME="/root"
IBPATH="/usr/bin"
INFOPATH="/usr/share/info:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.18/info:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.2/info"
INPUT_DEVICES="evdev keyboard mouse"
JAVAC="/etc/java-config-2/current-system-vm/bin/javac"
JAVA_HOME="/etc/java-config-2/current-system-vm"
JDK_HOME="/etc/java-config-2/current-system-vm"
KERNEL="linux"
LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text"
LDFLAGS="-Wl,-O1"
LDFLAGS_x86="-m elf_i386"
LD_LIBRARY_PATH="/usr/lib64/mpi/mpi-ompi/usr/lib64:"
LESS="-R -M --shift 5"
LESSOPEN="|lesspipe.sh %s"
LIBDIR_amd64="lib64"
LIBDIR_amd64_fbsd="lib64"
LIBDIR_ppc="lib32"
LIBDIR_ppc64="lib64"
LIBDIR_sparc32="lib32"
LIBDIR_sparc64="lib64"
LIBDIR_x86="lib32"
LIBDIR_x86_fbsd="lib32"
LINGUAS="it en"
LOGNAME="root"
LS_COLORS="rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:"
MAIL="/var/mail/root"
MAKEOPTS="-j9"
MANPATH="/usr/lib64/mpi/mpi-ompi/usr/share/man:/etc/java-config-2/current-system-vm/man:/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.18/man:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.3.2/man:/etc/java-config/system-vm/man/"
MULTILIB_ABIS="amd64 x86"
MULTILIB_STRICT_DENY="64-bit.*shared object"
MULTILIB_STRICT_DIRS="/lib32 /lib /usr/lib32 /usr/lib /usr/kde/*/lib32 /usr/kde/*/lib /usr/qt/*/lib32 /usr/qt/*/lib /usr/X11R6/lib32 /usr/X11R6/lib"
MULTILIB_STRICT_EXEMPT="(perl5|gcc|gcc-lib|binutils|eclipse-3|debug|portage)"
NETBEANS="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml"
OPENGL_PROFILE="xorg-x11"
PAGER="/usr/bin/less"
PATH="/usr/lib64/mpi/mpi-ompi/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.2"
PBS_SERVER_HOME="/var/spool/torque"
PKGDIR="/usr/portage/packages"
PORTAGE_ARCHLIST="ppc x86-openbsd ppc-openbsd ppc64 x86-winnt x86-fbsd ppc-aix alpha arm x86-freebsd s390 amd64 x86-macos x64-openbsd ia64-hpux hppa x86-netbsd amd64-linux ia64-linux x86 sparc-solaris x64-freebsd sparc64-solaris x86-linux x64-macos sparc m68k-mint ia64 mips ppc-macos x86-interix hppa-hpux amd64-fbsd x64-solaris mips-irix m68k sh x86-solaris sparc-fbsd"
PORTAGE_BINHOST_CHUNKSIZE="3000"
PORTAGE_BIN_PATH="/usr/lib64/portage/bin"
PORTAGE_COMPRESS_EXCLUDE_SUFFIXES="css gif htm[l]? jp[e]?g js pdf png"
PORTAGE_CONFIGROOT="/"
PORTAGE_DEBUG="0"
PORTAGE_DEPCACHEDIR="/var/cache/edb/dep"
PORTAGE_ELOG_CLASSES="log warn error"
PORTAGE_ELOG_MAILFROM="portage@localhost"
PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}"
PORTAGE_ELOG_MAILURI="root"
PORTAGE_ELOG_SYSTEM="save_summary echo"
PORTAGE_FETCH_CHECKSUM_TRY_MIRRORS="5"
PORTAGE_FETCH_RESUME_MIN_SIZE="350K"
PORTAGE_GID="250"
PORTAGE_INST_GID="0"
PORTAGE_INST_UID="0"
PORTAGE_PYM_PATH="/usr/lib64/portage/pym"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_RSYNC_RETRIES="3"
PORTAGE_TMPDIR="/var/tmp"
PORTAGE_VERBOSE="1"
PORTAGE_WORKDIR_MODE="0700"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage/layman/science"
PROFILE_ONLY_VARIABLES="ARCH ELIBC KERNEL USERLAND"
PWD="/root"
RESUMECOMMAND="/usr/bin/wget -c -t 5 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}""
ROOT="/"
ROOTPATH="/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.3.2"
RPMDIR="/usr/portage/rpm"
SHELL="/bin/bash"
SHLVL="1"
SSH_CLIENT="93.38.71.74 58944 22"
SSH_CONNECTION="93.38.71.74 58944 130.192.5.61 22"
SSH_TTY="/dev/pts/2"
STAGE1_USE="multilib nptl nptlonly unicode"
SYMLINK_LIB="yes"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
TERM="xterm-color"
USE="X acl acpi amd64 apache2 bash-completion bzip2 cairo ccache cli cracklib crypt cscope dbus diags dri fortran gd gif git gnome gtk hal heterogeneous iconv ipath isdnlog iser java jpeg kdeenablefinal kdehiddenvisibility libffi metis mlx4 mmx modules mpi-threads mthca mudflap multilib mysql ncurses nls nptl nptlonly nsplugin nvidia openal opengl openmp opensm openssl pbs pcre perl png pppd python rdma rds readline reflection reiserfs romio session spl sqlite srp sse sse2 ssh ssl subversion svg symlink sysfs tcpd threads tiff vim vnic vt xfs xorg xulrunner zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="evdev keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="it en" USERLAND="GNU" VIDEO_CARDS="vesa nvidia nv radeon"
USER="root"
USERLAND="GNU"
USE_EXPAND="ALSA_CARDS ALSA_PCM_PLUGINS APACHE2_MODULES APACHE2_MPMS CAMERAS CROSSCOMPILE_OPTS DVB_CARDS ELIBC FCDSL_CARDS FOO2ZJS_DEVICES FRITZCAPI_CARDS INPUT_DEVICES KERNEL LCD_DEVICES LINGUAS LIRC_DEVICES MISDN_CARDS NETBEANS_MODULES QEMU_SOFTMMU_TARGETS QEMU_USER_TARGETS SANE_BACKENDS USERLAND VIDEO_CARDS"
USE_EXPAND_HIDDEN="CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND"
USE_ORDER="env:pkg:conf:defaults:pkginternal:env.d"
VIDEO_CARDS="vesa nvidia nv radeon"
_="/usr/bin/emerge"
Comment 1 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev 2009-10-14 13:59:05 UTC
(In reply to comment #0)
> emerge ibutils fails compiling with errors and warnings like "warning:
> deprecated conversion from string constant to 'char*'" or "warning: 'str_token' may be used uninitialized in this function"

Actually these are not fatal and ibutils are not compiled with -Werror. If you could post build.log ('/var/tmp/portage/sys-infiniband/ibutils-1.2/temp/build.log') it would be great.

Comment 2 Vittorio 2009-10-14 14:09:27 UTC
Created attachment 207086 [details]
build log of the compilation failure

attached build log as requested
Comment 3 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev 2009-10-14 15:25:03 UTC
Created attachment 207108 [details, diff]
adding patches to ebuild
Comment 4 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev 2009-10-14 15:26:14 UTC
Created attachment 207110 [details, diff]
fixing compilation dependencies

without it binary is built prior to the library it depends on
Comment 5 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev 2009-10-14 15:26:47 UTC
Created attachment 207111 [details, diff]
fixing glib 2.10 issues
Comment 6 Alexey Shvetsov archtester gentoo-dev 2009-10-15 12:18:03 UTC
(In reply to comment #5)
> Created an attachment (id=207111) [details]
> fixing glib 2.10 issues
> 

Thanks fixed in overlay =)
Comment 7 Vittorio 2009-10-15 13:26:57 UTC
works! thanks a lot