You've dropped the patches that allowed the compilation of this package. No support for recent gcc or glibc both (or separately). rnafuncs.cpp:341: error: ‘sprintf’ was not declared in this scope rnafuncs.cpp:361: error: ‘sprintf’ was not declared in this scope rnafuncs.cpp: In static member function ‘static void RNAFuncs::drawRNAAlignment(const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, const std::string&, bool, const RNAFuncs::SquigglePlotOptions&)’: rnafuncs.cpp:582: error: ‘sprintf’ was not declared in this scope rnafuncs.cpp:588: error: ‘sprintf’ was not declared in this scope
*** Bug 284541 has been marked as a duplicate of this bug. ***
Sorry, I forgot to switch gcc back to 4.4. Should work now, please check.