Bug 282124 – Please stabilize sci-biology/bioruby-1.3.0

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Andrey Kislyuk (RETIRED) 2009-08-20 17:00:49 UTC]

Please stabilize sci-biology/bioruby-1.3.0.

[Comment 1 Chad A. Simmons 2009-08-26 18:56:39 UTC]

AMD64 Arch Tester Report

Compile/Install: Fails. I think it might need a bdep on rubygems.

>>> Compiling source in /var/tmp/portage/sci-biology/bioruby-1.3.0/work/bioruby-1.3.0 ...         
/usr/bin/ruby: no such file to load -- auto_gem (LoadError)                                       
 *                                                                                                
 * ERROR: sci-biology/bioruby-1.3.0 failed.                                                       
 * Call stack:                                                                                    
 *               ebuild.sh, line   49:  Called src_compile                                        
 *             environment, line 2455:  Called ruby_src_compile                                   
 *             environment, line 2398:  Called ruby_econf                                         
 *             environment, line 2346:  Called die                                                
 * The specific snippet of code:                                                                  
 *           ${RUBY} setup.rb config --prefix=/usr "$@" ${RUBY_ECONF} || die "setup.rb config failed";                                                                                                
 *  The die message:                                                                               
 *   setup.rb config failed                                                                        
 *                                                                                                 
 * If you need support, post the topmost build error, and the call stack if relevant.              
 * A complete build log is located at '/var/tmp/portage/sci-biology/bioruby-1.3.0/temp/build.log'. 
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/bioruby-1.3.0/temp/environment'.                                                                                           
 *                            

[Comment 2 Chad A. Simmons 2009-08-26 18:58:45 UTC]

Verified package is missing bdep. Looks OK to stable after someone adds the bdep to the ebuild.(not sure if it is just needed for build or runtime also)

[Comment 3 Jeremy Olexa (darkside) (RETIRED) 2009-09-06 05:04:19 UTC]

(In reply to comment #2)
> Verified package is missing bdep. Looks OK to stable after someone adds the
> bdep to the ebuild.(not sure if it is just needed for build or runtime also)
> 

Thanks Chad

@Andrey: permission to add amd64 keyword after dep is fixed! Thanks.

[Comment 4 Andrey Kislyuk (RETIRED) 2009-09-19 22:07:17 UTC]

Thanks for testing. I was unable to reproduce this bug - dev-ruby/rubygems is not installed and both bioruby-1.3.0 and bioruby-1.3.1 installed fine. Could someone clarify?

After that, I'll close this bug, please see bug 285626.

[Comment 5 Markus Meier 2009-09-22 11:40:34 UTC]

please readd us if you want this old version stabilized too.

  21 Sep 2009; Markus Meier <[e-mail]> bioruby-1.3.1.ebuild:
  amd64/x86 stable, bug #285626