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Bug 281688 - [Version Bump] sci-libs/{lapack-atlas,blas-atlas}-{3.8.3,3.9.12}
Summary: [Version Bump] sci-libs/{lapack-atlas,blas-atlas}-{3.8.3,3.9.12}
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Library (show other bugs)
Hardware: All Linux
: High enhancement
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
: 277199 (view as bug list)
Depends on:
Blocks:
 
Reported: 2009-08-16 17:16 UTC by Justin Lecher (RETIRED)
Modified: 2010-01-22 02:33 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


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Description Justin Lecher (RETIRED) gentoo-dev 2009-08-16 17:16:13 UTC
New version is out
Comment 1 Justin Lecher (RETIRED) gentoo-dev 2009-08-16 17:20:06 UTC
ATLAS 3.9.12 released 08/06/09, changes from 3.9.11
   * Complete rewrite of GER, SYR and SYR2:
     - New tuning mechinism tunes GER for in-L1, in-L2, and out-of-cache
       * Call ATL_<pre>ger_L1 if data known to be in L1 cache
       * Call ATL_<pre>ger_L2 if data known to be in L2 cache
     - Most architectures now lack GER arch defs
       * Provided GER archdefs 64-bit K10h and Core2
     - atlas_devel not yet updated
   * Relatively untested standard timing/tester code available for all
     tuned kernels (GER fairly well tested)
     - atlas_[mv,r1,mm]parse.h reads standard input/output files
     - atlas_[mv,r1,mm]testtime.h provides tester/timer calls for kernels
   * Can compile both lapack 3.2 and 3.1 with --with-netlib-lapack-tarfile
     - Removed support for other ways of building lapack
     - atlas_install mostly updated
   * Bug fixes
     - Fixed BETA=0 SCAL NaN-propogation bug (no more call to ATL_set)
     - Fixed C/Z GEMM JITcp bug where C was read when BETA=0
     - Fixed threaded LAPACK calling serial ilaenv  (QR speedup)
ATLAS 3.9.11 released 04/07/09, changes from 3.9.10
   * Added flags -Si [omp,antthr] 0/1/2 to allow ease of building ATLAS
     with alternative threading implementations
   * Fixed prototypes in atlas_f77wrap.h so that all thread interfaces
     are properly prototyped when they are selected by the above flags
   * Fixed missing TRMM prototype in atlas_tlvl3.h that caused STRSM
     to fail tests in xsl3blastst_pt
ATLAS 3.9.10 released 03/11/09, changes from 3.9.9
   * Rewrote tgemm's combine routine to work on arbitrary partitionings 
     combined in arbitrary orders (necessary for non-power-of-2 processors)
     - Restricted fix for SYRK (not general, as it isn't needed yet)
   * Fixed bug in EnforceNonPwr2LO caused by failure to rename moved
     structure in the Cinfp array
   * Fixed makefile problem that caused ATLAS to re-archive the L3BLAS for
     every tester compile
   * On windows, added -lkernel32 to LIBS macro to enable shared lib build
ATLAS 3.9.9 released 02/26/09, changes from 3.9.8
   * Fixed bug in Xtsyrk's ATL_tsyrkdecomp_K, both on when the algorithm
     is used, and correctness for when K is not large enough to give all
     processors NB of work.
   * Fixed bug in lanbtst, where single precision (S/C) used double values
     rather than single values when determining workspace requirements
   * Changed atlas_install to have a final library build phase
     - Was not rebuilding lib after post-build tuning
       -> Caused lapack and poss other files to be untuned unless user rebuilds
          by invoking tester/timer for each subpiece
       -> Caused dynamic libs to be built from badly tuned libs
   * Added missing lapack arch defs for Corei764 and MIPSICE9
ATLAS 3.9.8 released 02/23/09, changes from 3.9.7
   * Fixed bug in ATL_Xtgemm where ATL_thrdecompMM failed to return the
     number of processors on non-power-of-2 processor systems
   * Fixed bug in ATL_tsyrk where I was calling the K-splitting routine
     when the required workspace was large, rather than when it was small.
   * Fixed analagous problem in ATL_tsyrk as the 3.9.7 did for ATL_tgemm;
     however, tsyrk bug could not have been exercised by current decomposition.
   * Introduced some fixes & workarounds for SiCortex/MIPSICE9:
     - Changed default MIPSICE9 compiler back to gcc, since pathcc produces
       bad ATL_tsyrk when optimization is above -O1 (confirmed compiler error)
   * Added dependence on atlas_ptalias3.h in cblas interface Makefile.
ATLAS 3.9.7 released 02/20/09, changes from 3.9.6:
   * Fixed bug in ATL_tgemm that caused seg faults for some small-M tGEMMs
   * Added architectural defaults for K7323DNow (Athlon "classic")
ATLAS 3.9.6 released 02/01/09, Changes from 3.9.5:
   * Made it so LAPACK is tuned specifically for threading as well as for serial
     - Added threaded lapack arch defs for:
       + Core264SSE3, P4E64SSE3, Corei764SSE3
   * Made it so LAPACK NB-tuning is mu/nu aware
   * MIPSICE9 (sicortex) improvements:
     - added pathcc arch defs
     - updated gcc arch defs to better values
     --> Still getting errors on this platform
   * Some bug fixes:
     - Detect model 29 as Core2
     - Rewrote ptFlushAreasByCL to use new thread framework
     - Fixed handling of non-power-of-2 number of threads
     - Better dependencies for building ilaenv
ATLAS 3.9.5 released 12/11/08, Changes from 3.9.4:
   * Complete rewrite of ATLAS threading system:
     - Now supports native windows threads in addition to pthreads
     - Use of master-last and affinity increases threaded performance, with
       an advantage that grows with P (almost no advantage for P=2, but for
       instance LU is more than 60% faster asymptotically on a P=8 Core2)
       + OS X and FreeBSD don't support processor affinity, and so their
         performance is still bad
     - Cacheedge specifically tuned for threading (another 5%)
   * Changed emit_buildinfo so that it replaces all control characters with
     spaces (prevents errors under windows).
   * Added dependency info for ATL_ilaenv so that it is recompiled once 
     lapack tuning is complete
   * Fixed error in configure where it issues commands in wrong directory
     when the user builds lapack directly from a tarfile
   * Fixed typos in config.c where I used 'comp' rather than 'comps'.
   * Added mmtime_pt.c, which can allow us to find kernels that do well
     in parallel operation.
   * Various small configure fixes for windows
ATLAS 3.9.4 released 09/06/08, Changes from 3.9.3:
   * Improved Windows/cygwin configure with addition of archinfo_win.c
   * Added basic support for Windows/interix
     - Did not pursue much due to widespread seg fault in gcc, hundreds of
       hard-to-get "hot fixes", and ancient gnu tools that can't assemble SSE3
   * Removed special "no-need-to-copy" cases from ATLmm_JIK/IJK.c, since they
     occasionally seem to cause large performance drops.
   * Changed it so JIK matmul always called for rank-K update, in order to
     reduce access costs on C.
   * Fixed several errors in ATLAS's ILAENV.
   * Fixed several errors in configure
   * Fixed error when -Ss lasrc is given as relative rather than absolute path
   * Added BETA support for auto-building shared/dynamic libraries when the
     user passes --shared to configure (no need to explicitly set compiler
     flags [eg., -fPIC] for any of the known compilers):
     - Not fully tested, but appears to work for Windows, OS X and Linux
     - Now referenced in make install, but present process is crude
     - with --nof77, get clapack reather than lapack; eventually probably want
       a logical link of lapack
Comment 2 Justin Lecher (RETIRED) gentoo-dev 2009-12-22 22:18:56 UTC
*** Bug 277199 has been marked as a duplicate of this bug. ***
Comment 3 Joel Berendzen 2010-01-14 22:56:52 UTC
(In reply to comment #0)
> New version is out
> 

The version is now 3.9.21, and it's becoming urgent for me, as I have run into things that were broken in 3.9.3 that are supposedly fixed.

Unfortunately the size of the shared library patch is pretty daunting, though I may give it a try anyway.
Comment 4 Markus Dittrich (RETIRED) gentoo-dev 2010-01-19 23:06:15 UTC
(In reply to comment #3)
> (In reply to comment #0)
> > New version is out
> > 
> 
> The version is now 3.9.21, and it's becoming urgent for me, as I have run into
> things that were broken in 3.9.3 that are supposedly fixed.
> 

I'll try to have a look at it soon but past experience has shown
that it may take a while before all bits are working properl ;)

cheers,
Markus
Comment 5 Markus Dittrich (RETIRED) gentoo-dev 2010-01-21 04:07:09 UTC
Just FYI. I am mostly done with this. Unfortunately, there's a bug in 
atlas' build system which fails to build the threaded version of 
ILAENV which is new in 3.9.21. This might take me some time to
track down.

cheers,
Markus
Comment 6 Justin Lecher (RETIRED) gentoo-dev 2010-01-21 07:38:40 UTC
Thanks! I will wait for that.
Comment 7 Joel Berendzen 2010-01-21 20:31:36 UTC
Thanks for looking at this, Markus.  I did get far enough in the installation to notice that the shared-library stuff seems to all be incorporated now.  

The bug in the old code that is bothering me is failure of some numpy SVD routines which the newer ATLAS supposedly has fixed.
Comment 8 Markus Dittrich (RETIRED) gentoo-dev 2010-01-22 02:33:19 UTC
I've added 3.9.21 versions for blas/lapack-atlas to the tree
and both seem to be working (at least for the tests I've tried).

@Joel: I hope these fix your issues. 

cheers,
Markus