'emerge -v paraview' fails with: ... [ 28%] Building CXX object Utilities/Xdmf2/libsrc/CMakeFiles/Xdmf.dir/XdmfDataDesc.o /usr/include/H5Tpublic.h: In member function 'XdmfInt32 XdmfDataDesc::GetMemberShape(XdmfInt64, XdmfInt64*)': /usr/include/H5Tpublic.h:534: error: too many arguments to function 'int H5Tget_array_dims2(hid_t, hsize_t*)' /var/tmp/portage/sci-visualization/paraview-3.3_pre20080514/work/ParaView3/Utilities/Xdmf2/libsrc/XdmfDataDesc.cxx:568: error: at this point in file /usr/include/H5Tpublic.h: In member function 'XdmfInt32 XdmfDataDesc::AddCompoundMember(const char*, XdmfInt32, XdmfInt32, XdmfInt64*, XdmfInt64)': /usr/include/H5Tpublic.h:532: error: too many arguments to function 'hid_t H5Tarray_create2(hid_t, unsigned int, const hsize_t*)' /var/tmp/portage/sci-visualization/paraview-3.3_pre20080514/work/ParaView3/Utilities/Xdmf2/libsrc/XdmfDataDesc.cxx:712: error: at this point in file make[2]: *** [Utilities/Xdmf2/libsrc/CMakeFiles/Xdmf.dir/XdmfDataDesc.o] Error 1 make[1]: *** [Utilities/Xdmf2/libsrc/CMakeFiles/Xdmf.dir/all] Error 2 make: *** [all] Error 2 * * ERROR: sci-visualization/paraview-3.3_pre20080514 failed. Reproducible: Always root@condor:/root(23)# emerge --info Portage 2.1.6.13 (default/linux/amd64/2008.0/desktop, gcc-4.3.3, glibc-2.10.1-r0, 2.6.29-gentoo-r5 x86_64) ================================================================= System uname: Linux-2.6.29-gentoo-r5-x86_64-Intel-R-_Core-TM-2_CPU_6600_@_2.40GHz-with-gentoo-2.0.1 Timestamp of tree: Thu, 25 Jun 2009 08:30:03 +0000 distcc 3.1 x86_64-pc-linux-gnu [disabled] app-shells/bash: 4.0_p24 dev-java/java-config: 2.1.8-r1 dev-lang/python: 2.6.2-r1 dev-python/pycrypto: 2.0.1-r8 dev-util/cmake: 2.6.4 sys-apps/baselayout: 2.0.1 sys-apps/openrc: 0.4.3-r3 sys-apps/sandbox: 2.0 sys-devel/autoconf: 2.13, 2.63-r1 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2, 1.11 sys-devel/binutils: 2.19.1-r1 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6a virtual/os-headers: 2.6.29 ACCEPT_KEYWORDS="amd64 ~amd64" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=nocona -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-march=nocona -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch" FFLAGS="-march=nocona -O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo" LDFLAGS="-Wl,-O1" LINGUAS="de fr" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages/" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage/layman/zugaina /usr/local/portage/layman/dotnet /usr/local/portage/layman/science /usr/local/portage/layman/lordvan /usr/local/portage/layman/java-overlay /usr/local/portage/layman/perl-experimental /usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X Xaw3d a52 aac acl acpi administrator afs aiglx alsa amd64 amrr ao aotuv apache2 asf atlas auctex audacious audiofile automount bash-completion beagle berkdb bjam blas bluetooth bonobo boo boost branding bzip2 c++ cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cli consolekit corba cracklib cran crypt cups curl cxx daap dbus device-mapper dga dia divx djvu dlloader dmi doc dri ds3490 dv dvb dvd dvdr dvdread dvi dxr3 dynagraph eds effects elf emacs emboss encode epiphany esd evo examples exif expat extra fam fame ffmpeg fftw firefox fits flac fltk foomaticdb fortran fpx fuse galago gd gdal gdbm geos gif gimp gimpprint ginac glade glib glitz gml gmp gnokii gnome gnome-keyring gnuplot gnutls gphoto2 gpm graphics graphviz gs gsl gsm gstreamer gtk guile hal hardened harness hddtemp hdf hdf5 hlapi http httpd hvm iconv icq icu id3 ide imagemagick imap innodb ipod ipv6 irda irmc isdnlog ithreads jabber java java5 java6 jbig john jpeg jpeg2k kde kde4 kerberos kexi keyring kvm ladspa lame lapack latex lcms ldap libffi libgda libnotify libsamplerate lirc lm_sensors lua lzo lzw mad maildir mailwrapper math matroska midi mikmod mmx mmxext mng mod mono motif mozdevelop mozilla mozsvg mozxmlterm mp3 mp4 mp4live mpeg mpeg2 mplayer mtp mudflap multilib musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numarray numeric nvidia obex objc ocaml octave odbc ogdi ogg ole openexr opengl openmp pae pam pcre pda pdf perl pipechan plotutils plugins png podcast policykit posix postgres postscript ppds pppd preview-latex proj projectx pstricks python qhull qt3 qt3support qt4 quicktime readline reflection reiserfs rhythmbox rle rpc rrdcgi rrdtool samba sasl science sdl server session slang slp smp sndfile snmp soup sox speex spell spl sqlite sse sse2 ssl startup-notification stlport subtitles subversion suexec svg sysfs szip t1lib tcl tcpd tex theora threads thunderbird tidy tiff tk tntc truetype unicode usb userlocales utempter v4l2 vorbis wav webdav webdav-serf webkit wmf wxwindows xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" DVB_CARDS="cx8800 cx88xx tda1004x saa713" ELIBC="glibc" INPUT_DEVICES="keyboard mouse " KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="ide websvccommon nb harness apisupport groovy gsf j2ee java xml" USERLAND="GNU" VIDEO_CARDS="nv nvidia vesa" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
I masked >=sci-libs/hdf5-1.8.3 to overcome the problem with paraview-3.3_pre20080514 .
Any news?
(In reply to comment #2) > Any news? > It is still broken even with the just released paraview 3.6.1. Have you reported this upstream? Thanks, Markus
The problem is the fact the paraview relies on a deprecated hdf5 API plus some other badness. Hopefully, upstream will address this soon. In any case, I've added a fix for this to the upcoming paraview-3.6.1 ebuild. Best, Markus
Hi Juergen, This should be fixed in the paraview-3.6.1 ebuild that just hit portage. Please open a new bug against it if you are still having hdf5 issues. Thanks, Markus
Hi Markus, I can't test this now, because paraview is blocked by vtk: root@lynx:/root(1)# emerge -pvuDN paraview These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild U ] dev-util/cmake-2.6.4-r2 [2.6.4-r1] USE="emacs qt4 -python3% -vim-syntax" 0 kB [ebuild N ] sci-visualization/paraview-3.6.1 USE="boost doc examples hdf5 plugins python qt4 -mpi" 0 kB [blocks B ] sci-libs/vtk ("sci-libs/vtk" is blocking sci-visualization/paraview-3.6.1)
