as title says: /bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I.. -DGLADEDIR='"/usr/share/giggle/glade"' -DPLUGINDIR='"/usr/lib/giggle/plugins"' -pthread -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtksourceview-2.0 -I/usr/include/libxml2 -I/usr/include/libglade-2.0 -O2 -pipe -march=prescott -fomit-frame-pointer -MT giggle-clipboard.lo -MD -MP -MF .deps/giggle-clipboard.Tpo -c -o giggle-clipboard.lo giggle-clipboard.c ../libtool: line 841: X--tag=CC: command not found ../libtool: line 874: libtool: ignoring unknown tag : command not found ../libtool: line 841: X--mode=compile: command not found ../libtool: line 841: X--tag=CC: command not found ../libtool: line 841: X--tag=CC: command not found ../libtool: line 841: X--tag=CC: command not found ../libtool: line 874: libtool: ignoring unknown tag : command not found ../libtool: line 841: X--mode=compile: command not found ../libtool: line 1008: *** Warning: inferring the mode of operation is deprecated.: command not found ../libtool: line 1009: *** Future versions of Libtool will require --mode=MODE be specified.: command not found ../libtool: line 841: X--tag=CC: command not found ../libtool: line 1152: Xi686-pc-linux-gnu-gcc: command not found ../libtool: line 874: libtool: ignoring unknown tag : command not found ../libtool: line 1152: X-DHAVE_CONFIG_H: command not found ../libtool: line 841: X--mode=compile: command not found ../libtool: line 874: libtool: ignoring unknown tag : command not found ../libtool: line 874: libtool: ignoring unknown tag : command not found ../libtool: line 1152: X-I.: command not found $ emerge --info Portage 2.2_rc28 (default/linux/x86/2008.0, gcc-4.3.3, glibc-2.8_p20080602-r1, 2.6.28-gentoo-r4 i686) ================================================================= System uname: Linux-2.6.28-gentoo-r4-i686-Intel-R-_Pentium-R-_D_CPU_2.80GHz-with-glibc2.0 Timestamp of tree: Fri, 03 Apr 2009 10:15:01 +0000 distcc 3.1 i686-pc-linux-gnu [disabled] ccache version 2.4 [enabled] app-shells/bash: 3.2_p39 dev-java/java-config: 2.1.7 dev-lang/python: 2.5.4-r2 dev-util/ccache: 2.4-r7 dev-util/cmake: 2.6.3 sys-apps/baselayout: 2.0.0 sys-apps/openrc: 0.4.3-r1 sys-apps/sandbox: 1.2.18.1-r2 sys-devel/autoconf: 2.13, 2.63 sys-devel/automake: 1.5, 1.7.9-r1, 1.9.6-r2, 1.10.2 sys-devel/binutils: 2.18-r3 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.27-r2 ACCEPT_KEYWORDS="x86" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" ANT_HOME="/usr/share/ant" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ARCH="x86" AUTOCLEAN="yes" BINSORT_SCR="/tmp/root" BINTYPE="linux9" CBIN="/usr/bin" CBUILD="i686-pc-linux-gnu" CCACHE_DIR="/home/ccache" CCACHE_SIZE="3G" CCP4="/usr" CCP4I_HELP="/usr/lib/ccp4/ccp4i/help" CCP4I_TCLTK="/usr/bin" CCP4I_TOP="/usr/lib/ccp4/ccp4i" CCP4_BIN="/usr/bin" CCP4_BROWSER="mozilla" CCP4_HELPDIR="/usr/help/" CCP4_LIB="/usr/lib" CCP4_MASTER="/usr" CCP4_OPEN="UNKNOWN" CCP4_SCR="/tmp/root" CDOC="/usr/doc" CETC="/usr/etc" CEXAM="/usr/examples" CFLAGS="-O2 -pipe -march=prescott -fomit-frame-pointer" CHOST="i686-pc-linux-gnu" CHTML="/usr/html" CINCL="/usr/share/ccp4/include" CLASSPATH="/usr/bin:/usr/bin:." CLEAN_DELAY="5" CLIB="/usr/lib" CLIBD="/usr/share/ccp4/data" CLIBD_MON="/share/ccp4/data/monomers/" CLIBS="/usr/lib/src" CNS_CONFDB="/usr/share/cns/libraries/confdb" CNS_DATA="/usr/share/cns" CNS_DOC="/usr/share/doc/cns-1.2.1-r2" CNS_HELPLIB="/usr/share/cns/helplib" CNS_LIB="/usr/share/cns/libraries" CNS_MODULE="/usr/share/cns/modules" CNS_NMRLIB="/usr/share/cns/libraries/nmr" CNS_NMRMODULE="/usr/share/cns/modules/nmr" CNS_ROOT="/usr" CNS_SOLVE="/usr" CNS_TOPPAR="/usr/share/cns/libraries/toppar" CNS_XRAYLIB="/usr/share/cns/libraries/xray" CNS_XTALLIB="/usr/share/cns/libraries/xtal" CNS_XTALMODULE="/usr/share/cns/modules/xtal" COLLISION_IGNORE="/lib/modules" COLUMNS="279" CONFIG_PROTECT="/etc /usr/share/hddtemp/hddtemp.db /usr/share/nano/ /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d" COOT_REFMAC_LIB_DIR="/usr/share/coot/lib" CPROG="/usr/src" CRANK="/usr/ccp4i/crank" CVS_RSH="ssh" CXXFLAGS="-O2 -pipe -march=prescott -fomit-frame-pointer" DCCC_PATH="/usr/lib/distcc/bin" DISTCC_LOG="" DISTCC_VERBOSE="" DISTDIR="/usr/portage/distfiles" DYLD_LIBRARY_PATH="/usr/lib:/usr/lib" DYNAMO_DIR="${NMRBASE}/dynamo" DYNAMO_KEY="2002084" DYNAMO_PARAMS="${DYNAMO_DIR}/params" ECHANGELOG_USER="Justin Lecher (jlec) <jlec@j-schmitz.net>" EDITOR="/bin/nano" ELIBC="glibc" EMERGE_DEFAULT_OPTS="-t --verbose --jobs=3 --load-average=3 --keep-going" EMERGE_WARNING_DELAY="10" F77="gfortran" FCFLAGS="-O2 -pipe -march=prescott -fomit-frame-pointer" FEATURES="ccache distlocks fixpackages noinfo notitles parallel-fetch preserve-libs protect-owned sandbox sfperms strict unmerge-orphans userfetch" FETCHCOMMAND="/usr/bin/axel -a -o ${DISTDIR}/${FILE} ${URI}" FFLAGS="-O2 -pipe -march=prescott -fomit-frame-pointer" FORTANC="gfortran" GCC_SPECS="" GDK_USE_XFT="1" GENTOO_MIRRORS="http://gentoo.j-schmitz.net/mirror/ ftp://ftp.gentoo.mesh-solutions.com/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo/ http://mirror.switch.ch/ftp/mirror/gentoo/" GKLIB="/opt/usf-lib/" GUILE_LOAD_PATH="/usr/share/guile/1.8" HELPDIR="/usr/help/" HISTCONTROL="ignoredups" HISTFILESIZE="1000" HISTIGNORE="fg:bg" HISTSIZE="1000" HOME="/home/justin" INFOPATH="/usr/share/info:/usr/share/binutils-data/i686-pc-linux-gnu/2.18/info:/usr/share/gcc-data/i686-pc-linux-gnu/4.3.3/info" INPUT_DEVICES="keyboard mouse evdev" INTEL_BATCH="1" JAVAC="/etc/java-config-2/current-system-vm/bin/javac" JAVA_HOME="/etc/java-config-2/current-system-vm" JDK_HOME="/etc/java-config-2/current-system-vm" KERNEL="linux" LANG="en_GB.UTF-8" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LC_CTYPE="en_GB.UTF-8" LDFLAGS="-Wl,-O1,--hash-style=gnu,--sort-common,--as-needed" LESS="-R -M --shift 5" LESSOPEN="|lesspipe.sh %s" LINES="80" LINGUAS="en" LOGNAME="justin" LS_COLORS="no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.svgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:" MAKEOPTS="-j5 -l3" MANPATH="/etc/java-config-2/current-system-vm/man:/usr/man:/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/i686-pc-linux-gnu/2.18/man:/usr/share/gcc-data/i686-pc-linux-gnu/4.3.3/man:/opt/intel/cc/10.1.018/man:/opt/intel/fc/10.1.018/man:/etc/java-config/system-vm/man/:${NMRBASE}/man" MCTYPE="unix" MMCIFDIC="/usr/lib/cif_mmdic.lib" MOLREPLIB="/share/ccp4/data/monomers/" MOSHELPFILE="mosflm" MP_SET_NUMTHREADS="1" NETBEANS="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" NMRBASE="/opt/nmrpipe" NMRTXT="${NMRBASE}/nmrtxt" NOCOLOR="true" OMP_NUM_THREADS="2" OPENGL_PROFILE="xorg-x11" PAGER="/usr/bin/less" PATH="/data/scripts:/bin:/usr/bin" PDBH_BASE="${NMRBASE}/pdb" PDBH_DIR="${PDBH_BASE}/pdbH" PDBH_LIST="${PDBH_BASE}/pdbH.list" PDBH_TAB="${PDBH_BASE}/resolution.tab" PKGDIR="/usr/portage/packages" PLOT_COMMAND="lp -s -dmicrolaser" PORTAGE_ARCHLIST="ppc s390 amd64 x86 ppc64 x86-fbsd m68k arm sparc sh mips ia64 alpha hppa amd64-fbsd sparc-fbsd" PORTAGE_BINHOST_CHUNKSIZE="3000" PORTAGE_BIN_PATH="/usr/lib/portage/bin" PORTAGE_COMPRESS="lzma" PORTAGE_COMPRESS_EXCLUDE_SUFFIXES="css gif htm[l]? jp[e]?g js pdf png" PORTAGE_COMPRESS_FLAGS="-z -9 -f -S .lzma -v" PORTAGE_CONFIGROOT="/" PORTAGE_DEBUG="0" PORTAGE_DEPCACHEDIR="/var/cache/edb/dep" PORTAGE_ECLASS_WARNING_ENABLE="0" PORTAGE_ELOG_CLASSES="warn error log" PORTAGE_ELOG_MAILFROM="portage@localhost" PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}" PORTAGE_ELOG_MAILURI="root" PORTAGE_ELOG_SYSTEM="save echo" PORTAGE_FETCH_CHECKSUM_TRY_MIRRORS="5" PORTAGE_FETCH_RESUME_MIN_SIZE="350K" PORTAGE_GID="250" PORTAGE_INST_GID="0" PORTAGE_INST_UID="0" PORTAGE_PYM_PATH="/usr/lib/portage/pym" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_RSYNC_RETRIES="3" PORTAGE_TMPDIR="/var/tmp" PORTAGE_VERBOSE="1" PORTAGE_WORKDIR_MODE="0700" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/portage/local/layman/dberkholz /usr/portage/local/molmod/trunk /usr/portage/local/molmod/branches /usr/portage/local/sunrise/reviewed /usr/portage/local/science /usr/portage/local/private-overlay" PRELINK_PATH_MASK="/usr/lib/klibc" PRINT_COMMAND="lp -s -denscript" PROFILE_ONLY_VARIABLES="ARCH ELIBC KERNEL USERLAND" PUBLIC_FONT84="/usr/lib/font84.dat" PWD="/root" PYMOL_DATA="/usr/share/pymol/data" PYMOL_PATH="/usr/lib/python2.5/site-packages/pymol" PYMOL_SCRIPTS="/usr/share/pymol/scripts" RASMOLPATH="/usr/x-windows/RasMol/src" RESUMECOMMAND="/usr/bin/axel -a -o ${DISTDIR}/${FILE} ${URI}" ROOT="/" ROOTPATH="/opt/bin:/usr/i686-pc-linux-gnu/gcc-bin/4.3.3:/opt/intel/cc/10.1.018/bin:/opt/intel/fc/10.1.018/bin:/data/scripts" RPMDIR="/usr/portage/rpm" SGML_CATALOG_FILES="/etc/sgml/xml-docbook-4.1.2.cat:/etc/sgml/sgml-ent.cat:/etc/sgml/dsssl-docbook-stylesheets.cat:/etc/sgml/openjade-1.3.2.cat:/etc/sgml/sgml-docbook-3.1.cat:/etc/sgml/sgml-docbook.cat:/etc/sgml/xml-docbook-4.4.cat:/etc/sgml/sgml-lite.cat" SHELL="/bin/bash" SHLVL="5" SSH_CLIENT="134.94.85.156 57779 22" SSH_CONNECTION="134.94.85.156 57779 134.94.85.9 22" SSH_TTY="/dev/pts/1" STY="6177.pts-1.kancheli" SURF_DIR="${DYNAMO_DIR}/surface" SYNC="rsync://rsync.j-schmitz.net/gentoo-portage" TERM="screen" TERMCAP="SC|screen|VT 100/ANSI X3.64 virtual terminal:\ :DO=\E[%dB:LE=\E[%dD:RI=\E[%dC:UP=\E[%dA:bs:bt=\E[Z:\ :cd=\E[J:ce=\E[K:cl=\E[H\E[J:cm=\E[%i%d;%dH:ct=\E[3g:\ :do=^J:nd=\E[C:pt:rc=\E8:rs=\Ec:sc=\E7:st=\EH:up=\EM:\ :le=^H:bl=^G:cr=^M:it#8:ho=\E[H:nw=\EE:ta=^I:is=\E)0:\ :li#80:co#279:am:xn:xv:LP:sr=\EM:al=\E[L:AL=\E[%dL:\ :cs=\E[%i%d;%dr:dl=\E[M:DL=\E[%dM:dc=\E[P:DC=\E[%dP:\ :im=\E[4h:ei=\E[4l:mi:IC=\E[%d@:ks=\E[?1h\E=:\ :ke=\E[?1l\E>:vi=\E[?25l:ve=\E[34h\E[?25h:vs=\E[34l:\ 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glibc-omitfp gnome gpm graphics gtk hal hddtemp iconv icu isdnlog java javascript jpeg kdeenablefinal kqemu lapack lcms libnotify libsexy lm_sensors mailtrain md5sum midi mmx mp3 mpi mudflap multiuser nagios-dns nagios-ntp nagios-ping nagios-ssh nano-syntax ncurses nis nls nptl nptlonly nsplugin objc objc++ opengl openmp openntpd pam pcre pdf perl png pppd pymol python qt-static qt3support readline reflection rrdcgi rrdtool science sensord session smp spl sqlite sqlite3 sse sse2 ssl sysfs tcpd threads tiff truetype type1 unicode x86 xcomposite xorg xulrunner zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en" USERLAND="GNU" VIDEO_CARDS="intel" USER="justin" USERLAND="GNU" USE_EXPAND="ALSA_CARDS ALSA_PCM_PLUGINS APACHE2_MODULES APACHE2_MPMS CAMERAS CROSSCOMPILE_OPTS DVB_CARDS ELIBC FCDSL_CARDS FOO2ZJS_DEVICES FRITZCAPI_CARDS INPUT_DEVICES KERNEL LCD_DEVICES LINGUAS LIRC_DEVICES MISDN_CARDS NETBEANS_MODULES USERLAND VIDEO_CARDS" USE_EXPAND_HIDDEN="CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND" USE_ORDER="env:pkg:conf:defaults:pkginternal:env.d" VIDEO_CARDS="intel" WINDOW="0" WINEPREFIX="/home/justin/.wine" XCURSORS_THEME="Jimmac" XUSERFILESEARCHPATH="/usr/lib/X11/app-defaults/%N:/usr/lib/X11/app-defaults/%N:/usr/lib/X11/app-defaults" _="/usr/bin/emerge" _POSIX2_VERSION="199209"
Created attachment 187183 [details] /var/tmp/portage/dev-util/giggle-0.4.91/temp/build.log build.log
Please can you try emerging libtool-2.2.6a, and testing giggle again.
Ok, it turns out giggle-0.4.91 requires >=libtool-2 (both 2.2.4 and 2.2.6a work), and I've now changed the deps. Thanks for filing the bug. 5:)
There might be a better way of handling this similar to bug #264057. I may investigate it if needed. Thanks in advance.
Hmmm, the fix suggested in bug 264057 causes problems with as-needed, so I'm not intending to pursue that fix further. However if you want to investigate it further, you're welcome to. I'll push any fixes you might have to the tree if it doesn't cause other breakages...
Serkan, any progress on this, or can I mark is as FIXED with libtool-2 deps?
(In reply to comment #6) > Serkan, any progress on this, or can I mark is as FIXED with libtool-2 deps? > Sorry. You can resolve it as it is. Thanks
