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Bug 25710 - New Ebuild: app-sci/bioconductor
Summary: New Ebuild: app-sci/bioconductor
Status: RESOLVED WONTFIX
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: High enhancement (vote)
Assignee: Default Assignee for New Packages
URL:
Whiteboard:
Keywords: EBUILD
Depends on: 25711
Blocks:
  Show dependency tree
 
Reported: 2003-08-01 09:21 UTC by Gontran Zepeda
Modified: 2007-09-14 14:26 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
app-sci/bioconductor-1.2.ebuild (bioconductor-1.2.ebuild,774 bytes, text/plain)
2003-08-01 09:22 UTC, Gontran Zepeda
Details
A tar.bz2 file containing the dev-R portage directory. (dev-R.tar.bz2,34.46 KB, application/octet-stream)
2006-01-13 08:51 UTC, Brady Catherman
Details

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Description Gontran Zepeda 2003-08-01 09:21:59 UTC
Bioconductor is an open source and open development software project
for the analysis and comprehension of genomic data.

Will add a couple of dependencies needed to bootstrap bioconductor into
place using the sandbox.
Comment 1 Gontran Zepeda 2003-08-01 09:22:47 UTC
Created attachment 15321 [details]
app-sci/bioconductor-1.2.ebuild
Comment 2 Brady Catherman 2006-01-13 08:51:29 UTC
Created attachment 77002 [details]
A tar.bz2 file containing the dev-R portage directory.

When building this package I took a totally different approach. I creaded a dev-perl like system of packages so users could pick and choose every package that they wanted.

I have some of the CRAN packages and most of the bioconductor packages working. The only one that is currently broken is RGtk because it seems to want to fail to find the gtk-config or pkg-config programs.
Comment 3 Carsten Lohrke (RETIRED) gentoo-dev 2006-02-12 17:15:18 UTC
(In reply to comment #2)
> Created an attachment (id=77002) [edit]
> A tar.bz2 file containing the dev-R portage directory.

Don't do that. We don't even look at attached tarballs. Plain text attachments, please.
Comment 4 Jakub Moc (RETIRED) gentoo-dev 2007-09-14 14:26:27 UTC
Either find a maintainer, or if you want to maintain it yourself, feel free to reopen and join project sunrise, details here:

http://www.gentoo.org/proj/en/sunrise

The ebuild here needs updating as well, current version is 2.0 

Thanks. WONTFIX meanwhile.