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Bug 255737 - sci-libs/scipy-0.6.0-r6 fails tests
Summary: sci-libs/scipy-0.6.0-r6 fails tests
Status: RESOLVED UPSTREAM
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: High minor
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2009-01-21 10:06 UTC by Dustin Polke
Modified: 2009-02-02 17:13 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


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Description Dustin Polke 2009-01-21 10:06:49 UTC
Relevant excerpts from build log:

test_fromimage (scipy.misc.tests.test_pilutil.test_pilutil) ... FAIL
test_imresize (scipy.misc.tests.test_pilutil.test_pilutil) ... FAIL
test_explicit (scipy.tests.test_odr.test_odr) ... FAIL
test_multi (scipy.tests.test_odr.test_odr) ... FAIL
ERROR: check_integer (scipy.io.tests.test_array_import.test_read_array)

FAILED (failures=4, errors=1)

Reproducible: Always

Steps to Reproduce:




# emerge -pv scipy
[ebuild     U ] sci-libs/scipy-0.6.0-r6 [0.6.0-r4] USE="-debug -fftw -sandbox -umfpack" 0 kB


Portage 2.1.6.4 (default/linux/amd64/2008.0, gcc-4.1.2, glibc-2.6.1-r0, 2.6.26-gentoo_dazuko-patch-r4-stable x86_64)
=================================================================
System uname: Linux-2.6.26-gentoo_dazuko-patch-r4-stable-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T8100_@_2.10GHz-with-glibc2.2.5
Timestamp of tree: Wed, 21 Jan 2009 07:20:01 +0000
app-shells/bash:     3.2_p39
dev-java/java-config: 1.3.7-r1, 2.1.6-r1
dev-lang/python:     2.5.2-r7
dev-util/cmake:      2.4.6-r1
sys-apps/baselayout: 1.12.11.1
sys-apps/sandbox:    1.2.18.1-r2
sys-devel/autoconf:  2.13, 2.63
sys-devel/automake:  1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2
sys-devel/binutils:  2.18-r3
sys-devel/gcc-config: 1.4.0-r4
sys-devel/libtool:   1.5.26
virtual/os-headers:  2.6.27-r2
ACCEPT_KEYWORDS="amd64"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=nocona -O2 -pipe -ggdb"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/bin/mygenkernel /usr/sbin/run-crons"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d"
CXXFLAGS="-march=nocona -O2 -pipe -ggdb"
DISTDIR="/usr/portage/distfiles"
FEATURES="collision-protect distlocks fixpackages multilib-strict parallel-fetch protect-owned sandbox sfperms splitdebug strict test unmerge-orphans userfetch userpriv usersandbox"
GENTOO_MIRRORS="ftp://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/             ftp://linux.rz.ruhr-uni-bochum.de/gentoo-mirror/                ftp://gd.tuwien.ac.at/opsys/linux/gentoo/               ftp://gentoo.inode.at/source/            ftp://pandemonium.tiscali.de/pub/gentoo/"
LANG="C"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en de"
MAKEOPTS="-j5"
PKGDIR="/home/ftp/binpkg/"
PORTAGE_COMPRESS=""
PORTAGE_RSYNC_EXTRA_OPTS="--timeout=500"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/portage/local/layman/alon-barlev /usr/portage/local/layman/sunrise /usr/portage/local/layman/science /usr/portage/local/modified /usr/portage/local/own"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="X Xaw3d a52 aac aalib accessibility acl acpi alsa amd64 amr amrnb amrr amrwb apm async audacious audiofile bash-completion battery berkdb bindist bl bluetooth branding bzip2 cairo cardbus cdinstall cjk cli cpufreq cracklib crypt css ctype cups dbus dga directfb divx dri dts dvd dvdr dvdread eds encode evo exif exiv2 fam fbcon fbcondecor fbsplash ffmpeg flac foomaticdb force-cgi-redirect fortran ftp gd gdbm gif gimp glade glitz gmedia gmp gnutls gphoto2 gs gsm gstreamer gtk gtkhtml guile hal hddtemp hdf5 iconv icq icu idn ieee1394 imagemagick imap imlib iproute2 isdnlog jack java javascript jikes jpeg jpeg2k kerberos keyscrub kpathsea laptop latex lcms ldap libcaca libnotify libv4l2 libwww live lm_sensors logrotate loop-aes lzo mad memlimit midi mikmod mime mmx mmxext mng motif mp2 mp3 mp4 mpeg mudflap multilib musepack ncurses nls nntp nowin nptl nptlonly nsplugin ntp nvidia ogg opengl openmp opensslcrypto pam pch pcmcia pcre pda pdf perl plotutils png posix ppds pppd print python quicktime readline realmedia reflection rtsp ruby rubytests samba sasl sdl server session simplexml slang sndfile soap sockets sou speex spell spl sse sse2 ssl ssse3 startup-notification stream svg swat sysfs syslog tcpd tetex tga theora threads tiff truetype unicode usb userlocales v4l v4l2 vcd vim-syntax vim-with-x vorbis wifi winbind wma wmf wmp wxwindows x264 xanim xcomposite xine xinetd xml xmp xorg xpm xsl xulrunner xv xvid xvmc zlib" ALSA_CARDS="hda-intel mpu401" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CAMERAS="fuji ptp2" ELIBC="glibc" INPUT_DEVICES="keyboard mouse ps2mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en de" USERLAND="GNU" VIDEO_CARDS="nvidia"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, PORTAGE_COMPRESS_FLAGS
Comment 1 Sébastien Fabbro (RETIRED) gentoo-dev 2009-02-02 16:56:06 UTC
Hi,

Indeed, scipy tests are known to fail. Recently bumped 0.7.0_rc2 is no exception. Upstream is doing an effort to fix this, so I would suggest to report test failures upstream, probably on 0.7* releases only. I have currently no time to dig deeply into scipy code, unless tests failures are really due to patches I've applied from or the ebuild itself.
Re-open if the failures you experience are due to it.

Thanks.
Comment 2 Dustin Polke 2009-02-02 17:13:38 UTC
(In reply to comment #1)
> Hi,
> 
> Indeed, scipy tests are known to fail. Recently bumped 0.7.0_rc2 is no
> exception. Upstream is doing an effort to fix this, so I would suggest to
> report test failures upstream, probably on 0.7* releases only. I have currently
> no time to dig deeply into scipy code, unless tests failures are really due to
> patches I've applied from or the ebuild itself.
> Re-open if the failures you experience are due to it.
> 
> Thanks.

Okay. Thought that test failure issue was fixed because test restriction has been dropped.