Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 250405 - [EBUILD]new ebuild for psipred
Summary: [EBUILD]new ebuild for psipred
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: High enhancement (vote)
Assignee: Andrey Kislyuk (RETIRED)
URL: http://bioinf.cs.ucl.ac.uk/psipred/
Whiteboard: [science-overlay]
Keywords: EBUILD, InOverlay
Depends on:
Blocks:
 
Reported: 2008-12-09 15:43 UTC by Hugo Mildenberger
Modified: 2010-10-19 07:03 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
psipred ebuild in plain text format (psipred-2.6.1.ebuild,1.99 KB, text/plain)
2008-12-09 15:45 UTC, Hugo Mildenberger
Details
psipred metadata in plain text format (metadata.xml,230 bytes, text/plain)
2008-12-09 15:45 UTC, Hugo Mildenberger
Details
psipred ChangeLog in plain text format (ChangeLog,126 bytes, text/plain)
2008-12-09 15:46 UTC, Hugo Mildenberger
Details
psipred Manifest in plain text format (Manifest,1.10 KB, text/plain)
2008-12-09 15:47 UTC, Hugo Mildenberger
Details
psipred license in plain text format (psipred2,3.89 KB, text/plain)
2008-12-09 15:58 UTC, Hugo Mildenberger
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Hugo Mildenberger 2008-12-09 15:43:36 UTC
psipred is used for protein secondary structure prediction
Comment 1 Hugo Mildenberger 2008-12-09 15:45:15 UTC
Created attachment 174728 [details]
psipred ebuild in plain text format
Comment 2 Hugo Mildenberger 2008-12-09 15:45:56 UTC
Created attachment 174730 [details]
psipred metadata in plain text format
Comment 3 Hugo Mildenberger 2008-12-09 15:46:39 UTC
Created attachment 174732 [details]
psipred ChangeLog in plain text format
Comment 4 Hugo Mildenberger 2008-12-09 15:47:22 UTC
Created attachment 174733 [details]
psipred Manifest in plain text format
Comment 5 Hugo Mildenberger 2008-12-09 15:51:59 UTC
RDEPEND is incomplete, becaus scripts provided by this package refer to programs provided by, e.g., ncbi-blast, which is not yet provided as a Gentoo package.
Comment 6 Hugo Mildenberger 2008-12-09 15:58:03 UTC
Created attachment 174736 [details]
psipred license in plain text format 

Unsure what to do with license files. Should the ebuild install it, or are licenses managed separately?
Comment 7 Jeremy Olexa (darkside) (RETIRED) archtester gentoo-dev Security 2008-12-30 17:05:15 UTC
(this is an automated message based on filtering criteria that matched this bug)

Hello, The Gentoo Team would like to firstly thank you for your ebuild submission. We also apologize for not being able to accommodate you in a timely manor. There are simply too many new packages.

Allow me to use this opportunity to introduce you to Gentoo Sunrise. The sunrise overlay[1] is a overlay for Gentoo which we allow trusted users to commit to and all users can have ebuilds reviewed by Gentoo devs for entry into the overlay. 
So, the sunrise team is suggesting that you look into this and submit your ebuild to the overlay where even *you* can commit to. =)

Because this is a mass message, we are also asking you to be patient with us. We anticipate a large number of requests in a short time. 

Thanks,
On behalf of the Gentoo Sunrise Team,
Jeremy.

[1]: http://www.gentoo.org/proj/en/sunrise/
[2]: http://overlays.gentoo.org/proj/sunrise/wiki/SunriseFaq
Comment 8 Andrey Kislyuk (RETIRED) gentoo-dev 2009-04-17 13:40:02 UTC
Taking bug.
Comment 9 Justin Lecher (RETIRED) gentoo-dev 2010-10-19 07:03:17 UTC
already in the tree.