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Bug 246330 - sci-physics/mpb-1.4.2(-r1) does not emerge with possibly guile error message
Summary: sci-physics/mpb-1.4.2(-r1) does not emerge with possibly guile error message
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: AMD64 Linux
: High normal
Assignee: Gentoo Linux bug wranglers
URL:
Whiteboard:
Keywords:
: 246334 (view as bug list)
Depends on:
Blocks:
 
Reported: 2008-11-10 19:53 UTC by Lukas Oliva
Modified: 2008-11-11 11:58 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log from /var/tmp/portage/temp (build.log,30.35 KB, text/plain)
2008-11-10 19:54 UTC, Lukas Oliva
Details

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Description Lukas Oliva 2008-11-10 19:53:42 UTC
After some updating (it is long time since mpb was rebuild so I do not know which one caused the problem), the revdep-rebuild --ignore nor emerge mpb do not work with following message:

 * ERROR: sci-physics/mpb-1.4.2-r1 failed.
 * Call stack:
 *               ebuild.sh, line   49:  Called src_compile
 *             environment, line 2780:  Called die
 * The specific snippet of code:
 *       MAKEOPTS="-j1" emake || die;
 *  The die message:
 *   (no error message)
 * 
 * If you need support, post the topmost build error, and the call stack if relevant.
 * A complete build log is located at '/var/tmp/portage/sci-physics/mpb-1.4.2-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-physics/mpb-1.4.2-r1/temp/environment'.

which is possibly caused by guile-related problem (build.log follows). Reemergeing guile-1.8.2, 1.8.3-r2 nor 1.8.4 seems to help.

matrix-smob.o: In function `sqmatrix2scm':
matrix-smob.c:(.text+0x74c): undefined reference to `scm_freelist'
matrix-smob.c:(.text+0x760): undefined reference to `scm_freelist'
matrix-smob.c:(.text+0x7a6): undefined reference to `scm_freelist'
matrix-smob.c:(.text+0x7ab): undefined reference to `scm_master_freelist'
matrix-smob.o: In function `evectmatrix_slice2scm':
matrix-smob.c:(.text+0xab7): undefined reference to `scm_freelist'
matrix-smob.c:(.text+0xacf): undefined reference to `scm_freelist'
matrix-smob.c:(.text+0xb6e): undefined reference to `scm_freelist'
matrix-smob.c:(.text+0xb73): undefined reference to `scm_master_freelist'
matrix-smob.o: In function `evectmatrix2scm':
matrix-smob.c:(.text+0xddc): undefined reference to `scm_freelist'
matrix-smob.c:(.text+0xdf0): undefined reference to `scm_freelist'
matrix-smob.c:(.text+0xe69): undefined reference to `scm_freelist'
matrix-smob.c:(.text+0xe6e): undefined reference to `scm_master_freelist'
field-smob.o: In function `field2scm':
field-smob.c:(.text+0xf33): undefined reference to `scm_freelist'
field-smob.c:(.text+0xf4b): undefined reference to `scm_freelist'
field-smob.c:(.text+0xf63): undefined reference to `scm_freelist'
field-smob.c:(.text+0xf68): undefined reference to `scm_master_freelist'
collect2: ld returned 1 exit status
make[1]: *** [mpb] Error 1
make[1]: Leaving directory `/var/tmp/portage/sci-physics/mpb-1.4.2-r1/work/mpb-1.4.2/mpb-ctl'
make: *** [all-recursive] Error 1



Reproducible: Always

Steps to Reproduce:
1. revdep-rebuild --ignore
2.
3.

Actual Results:  
sci-physics/mpb does not emerge for both versions available or three last stable dev-scheme/guile versions

Expected Results:  
sci-physics/mpb will emerge at least with stable version of guile (resp. guile-lib ...)

I am not sure what scheme/guile packages are involved, so I attach guile related packages I have installed:

eix guile  | grep "\[I\]" 
[I] dev-scheme/guile
[I] dev-scheme/guile-gui
[I] dev-scheme/guile-lib
[I] dev-scheme/guile-www
[I] x11-libs/guile-gtk

eix scheme  | grep "\[I\]" 
[I] app-emacs/scheme-complete
[I] app-vim/colorschemes
[I] app-xemacs/scheme
[I] dev-scheme/drscheme
[I] dev-scheme/scheme48
[I] dev-scheme/sigscheme

emerge --info 
 * Overlay eclass overrides eclass from PORTDIR:
 * 
 *   '/usr/portage/local/layman/emacs/eclass/bzr.eclass'
 * 
 * It is best to avoid overridding eclasses from PORTDIR because it will
 * trigger invalidation of cached ebuild metadata that is distributed with
 * the portage tree. If you must override eclasses from PORTDIR then you
 * are advised to run `emerge --regen` after each time that you run `emerge
 * --sync`. Set PORTAGE_ECLASS_WARNING_ENABLE="0" in /etc/make.conf if you
 * would like to disable this warning.
Portage 2.1.4.5 (default/linux/amd64/2008.0, gcc-4.1.2, glibc-2.6.1-r0, 2.6.20-gentoo-r8 x86_64)
=================================================================
System uname: 2.6.20-gentoo-r8 x86_64 AMD Athlon(tm) 64 Processor 3500+
Timestamp of tree: Mon, 10 Nov 2008 13:45:01 +0000
distcc 2.18.3 x86_64-pc-linux-gnu (protocols 1 and 2) (default port 3632) [disabled]
app-shells/bash:     3.2_p33
dev-java/java-config: 1.3.7, 2.1.6
dev-lang/python:     2.4.4-r9, 2.5.2-r8
dev-python/pycrypto: 2.0.1-r6
dev-util/cmake:      2.4.6-r1
sys-apps/baselayout: 1.12.11.1
sys-apps/sandbox:    1.2.18.1-r2
sys-devel/autoconf:  2.13, 2.61-r2
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1-r1
sys-devel/binutils:  2.18-r3
sys-devel/gcc-config: 1.4.0-r4
sys-devel/libtool:   1.5.26
virtual/os-headers:  2.6.23-r3
ACCEPT_KEYWORDS="amd64"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=k8 -mno-tls-direct-seg-refs"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config /var/spool/torque"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d"
CXXFLAGS="-O2 -pipe -march=k8 -mno-tls-direct-seg-refs"
DISTDIR="/usr/portage/distfiles"
FEATURES="buildpkg collision-protect digest distlocks fixpackages metadata-transfer parallel-fetch sandbox sfperms strict unmerge-orphans userfetch"
GENTOO_MIRRORS="http://gentoo.supp.name/ http://gentoo.mirror.web4u.cz/ ftp://ftp.mneisen.org/gentoo http://gentoo.inode.at/ ftp://gentoo.mirror.web4u.cz/"
LDFLAGS="-Wl,-O1"
LINGUAS="cs en"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/portage/local/layman/marineam-xen /usr/portage/local/layman/custom-kernels /usr/portage/local/layman/enlightenment /usr/portage/local/layman/science /usr/portage/local/layman/emacs"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="3dnow X Xaw3d acl acpi alsa amd64 apache2 avahi bash-completion berkdb branding bzip2 caps cdr cli cracklib crypt cups dbus djvu doc dri dvd emacs fontconfig fortran gdbm gnome gnutls gpm gstreamer gtk hal hddtemp iconv imagemagick imap ipv6 isdnlog maildir midi mmx mudflap multilib mysql ncurses nls nptl nptlonly nsplugin ogg opengl openmp pam paste64 pcre perl png pppd python readline reflection screen session spell spl sse sse2 ssl sysfs tcpd toolbar truetype unicode vim vim-syntax vorbis xinerama xorg xprint zlib zsh-completion" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config log_forensic logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="cs en" USERLAND="GNU" VIDEO_CARDS="nvidia nv v4l vesa vesafb"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Lukas Oliva 2008-11-10 19:54:40 UTC
Created attachment 171345 [details]
build.log from /var/tmp/portage/temp
Comment 2 Wormo (RETIRED) gentoo-dev 2008-11-10 20:40:46 UTC
It seems you have some guile stuff in /usr/local that could be causing problems:

checking for libctl dir... /usr/local/share/libctl
Comment 3 Wormo (RETIRED) gentoo-dev 2008-11-10 20:41:47 UTC
*** Bug 246334 has been marked as a duplicate of this bug. ***
Comment 4 Lukas Oliva 2008-11-11 08:11:09 UTC
(In reply to comment #2)
> It seems you have some guile stuff in /usr/local that could be causing
> problems:
> 
> checking for libctl dir... /usr/local/share/libctl
> 

Hi, yes, thanks it was present to quickly fix some guile-related problems and I have forgotten it, nevertheless removing /usr/local/share/{guile,libctl} and reemerging all guile and libctl depending programs does not resolve mpb problem. The error persits.

Oh, and sorry for filling the report twice.
Comment 5 Lukas Oliva 2008-11-11 11:58:16 UTC
(In reply to comment #2)
> It seems you have some guile stuff in /usr/local that could be causing
> problems:
> 
> checking for libctl dir... /usr/local/share/libctl
> 

Ok, yes, you were right in previous post I tried to remove just libs and have forgotten about /usr/local/include, after renaming /usr/local, everything compiled fine, thanks once more.