pgplot does not build when more than one processor/core is available. It needs MAKEOPTS=-j1 Reproducible: Always
It does not compile for me even with MAKEOPTS="-j1": root@condor:/usr/src(237)# grep MAKEOPTS /etc/make.conf MAKEOPTS="-j1" root@condor:/usr/src(238)# emerge -vuDN world ... >>> Emerging (1 of 9) sci-libs/pgplot-5.2.2-r3 * pgplot522.tar.gz RMD160 SHA1 SHA256 size ;-) ... [ ok ] ... x86_64-pc-linux-gnu-gcc -c -Wall -DPG_PPU -I. -march=nocona -O2 -pipe -fPIC cpg*.c rm -f cpg*.c gfortran -shared -o libcpgplot.so.5 -Wl,-soname,libcpgplot.so.5 -L. -lpgplot cpg*.o -lpgplot -lX11 -lXt -lpng /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.2/../../../../x86_64-pc-linux-gnu/bin/ld: ./libpgplot.a(pgarro.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC ./libpgplot.a: could not read symbols: Bad value collect2: ld returned 1 exit status
Please post your `emerge --info' too and attach the entire build log to this bug report.
root@condor:/usr/src(239)# emerge --info Portage 2.2_rc13 (default-linux/amd64/2007.0, gcc-4.3.2, glibc-2.8_p20080602-r0, 2.6.27.4 x86_64) ================================================================= System uname: Linux-2.6.27.4-x86_64-Intel-R-_Core-TM-2_CPU_6600_@_2.40GHz-with-glibc2.2.5 Timestamp of tree: Thu, 06 Nov 2008 06:02:01 +0000 distcc 3.0 x86_64-pc-linux-gnu [disabled] app-shells/bash: 3.2_p39 dev-java/java-config: 1.3.7, 2.1.6-r1 dev-lang/python: 2.4.4-r15, 2.5.2-r8 dev-python/pycrypto: 2.0.1-r6 dev-util/cmake: 2.6.2 sys-apps/baselayout: 2.0.0 sys-apps/openrc: 0.3.0-r1 sys-apps/sandbox: 1.2.18.1-r3 sys-devel/autoconf: 2.13, 2.63 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1-r1 sys-devel/binutils: 2.19 sys-devel/gcc-config: 1.4.0-r4 sys-devel/libtool: 2.2.6a virtual/os-headers: 2.6.27-r2 ACCEPT_KEYWORDS="amd64 ~amd64" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=nocona -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /e tc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c /etc/udev/r ules.d" CXXFLAGS="-march=nocona -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="distlocks fixpackages parallel-fetch preserve-libs protect-owned sandbox sfperms strict unmerge-orphans userfetch" FFLAGS="-march=nocona -O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo" LDFLAGS="" LINGUAS="de fr" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles - -exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage/layman/science /usr/local/portage/layman/java-overlay /usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X Xaw3d a52 aac acl acpi administrator afs aiglx alsa amd64 amrr ao aotuv apache2 asf atlas auctex audacious audiofile automount bash-completion beag le berkdb bjam blas bluetooth bonobo boo boost bzip2 c++ cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cli corba cracklib cran crypt cups curl cxx daap dbus device-mapper dga dia divx djvu dlloader dmi dri ds3490 dv dvb dvd dvdr dvi dxr3 dynagraph eds effects elf emacs emboss encode epiphany esd evo examp les exif expat extra fam fame ffmpeg fftw firefox fits flac fltk foomaticdb fortran fpx galago gd gdal gdbm geos gif gimp gimpprint ginac glade glitz gml gmp gnokii gnome gnuplot gnutls gphoto2 gpm graphics graphviz gs gsl gsm gstreamer gtk guile hal hardened hddtemp hdf hdf5 hlapi http hvm iconv icq icu id 3 imagemagick imap innodb ipv6 irda irmc isdnlog ithreads jabber java jbig john jpeg jpeg2k kde4 kerberos kexi keyring ladspa lame lapack latex lcms ldap libffi libgda libsamplerate lirc lm_sensors lua lzo lzw mad maildir math matroska midi mmx mmxext mng mod mono motif mozdevelop mozilla mozsvg mozxmlterm mp3 mp4 mp4live mpeg mpeg2 mplayer mudflap musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs numarray numeric nvidia obex ocaml octave odbc ogdi ogg ole opengl openmp pae pam pcre pda pdf perl plotutils plugins png posix postgres pos tscript pppd preview-latex proj projectx pstricks python qhull quicktime readline reflection reiserfs rhythmbox rle rpc rrdcgi rrdtool samba sasl science sdl session slang slp smp sndfile snmp soup sox speex spell spl sqlite sse sse2 ssl stlport subtitles subversion suexec svg sysfs t1lib tcl tcpd tex theor a threads thunderbird tidy tiff tk truetype unicode userlocales utempter v4l2 vorbis wmf wxwindows xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xp m xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_loc k dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negot iation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" DVB_CARDS="cx88 00 cx88xx " ELIBC="glibc" INPUT_DEVICES="keyboard mouse " KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtx orb ncurses text" LINGUAS="de fr" USERLAND="GNU" VIDEO_CARDS="nv nvidia vesa" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Created attachment 170964 [details] /var/tmp/portage/sci-libs/pgplot-5.2.2-r3/temp/build.log
This problem occur at all my x86_64 machines. And it blocks the building of some other packages: root@grizzly:/usr/local/portage/sci-geosciences/grass(101)# emerge -vuDN world ... /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.2/../../../../x86_64-pc-linux-gnu/bin/ld: ./libpgplot.a(pgarro.o): relocation R_X86_64_32 against `a local symbol' can not be use d when making a shared object; recompile with -fPIC ./libpgplot.a: could not read symbols: Bad value collect2: ld returned 1 exit status make: *** [libcpgplot.so] Error 1 * * ERROR: sci-libs/pgplot-5.2.2-r3 failed. ... root@grizzly:/usr/local/portage/sci-geosciences/grass(102)# emerge -vuDN --resume --skipfirst world These are the packages that would be merged, in order: Calculating dependencies \ * Invalid resume list: * * ('ebuild', '/', 'dev-texlive/texlive-latex-2008-r1', 'merge') * ('ebuild', '/', 'dev-texlive/texlive-latexextra-2008-r1', 'merge') * ('ebuild', '/', 'dev-texlive/texlive-latexrecommended-2008-r2', 'merge') * ('ebuild', '/', 'sys-cluster/mpich2-1.0.8', 'merge') * ('ebuild', '/', 'dev-texlive/texlive-pictures-2008-r1', 'merge') * ('ebuild', '/', 'net-analyzer/nagios-core-3.0.5', 'merge') * ('ebuild', '/', 'gnome-extra/yelp-2.24.0-r10', 'merge') * ('ebuild', '/', 'net-analyzer/nagios-3.0.5', 'merge') * ('ebuild', '/', 'app-emacs/php-mode-1.5.0', 'merge') * ('ebuild', '/', 'app-emacs/vm-8.0.12', 'merge') * ('ebuild', '/', 'dev-libs/libgweather-2.24.1', 'merge') * ('ebuild', '/', 'net-www/swfdec-mozilla-0.8.2', 'merge') * ('ebuild', '/', 'app-pda/multisync-0.83_pre20050414-r5', 'merge') * * One or more packages are either masked or have missing dependencies: * * sci-libs/pgplot pulled in by: * ('installed', '/', 'dev-perl/PGPLOT-2.20', 'nomerge') * * The resume list contains packages that are either masked or have * unsatisfied dependencies. Please restart/continue the operation * manually, or use --skipfirst to skip the first package in the list and * any other packages that may be masked or have missing dependencies.
(In reply to comment #5) > This problem occur at all my x86_64 machines. And it blocks the building of > some other packages: > The problem seems to occur whenever a dynamic library is built from an archive (.a) of objects which have been compiled without -fPIC. I, too, have these on my AMD64 machines.
Should be fixed in cvs.
not sure what "Should be fixed in cvs." should tell us, but there is still no working version available in portage...
