I suggest two things: 1. Add /usr/portage/skel.* to a package to make it easier to update them. 2. Update /usr/portage/skel.ebuild to reflect current state: -both DEPEND and RDEPEND are not needed by default, so they should be commented out -econf dies by itself, so the || die switch should be removed
It's probably a good idea to attach a unified diff to this bug report. Another idea is to assign the bug report to someone willing to maintain skel.ebuild - maybe you should post an RFC to the gentoo-dev@ mailing list.